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GEO accession:
Sample GSM371638
Query DataSets for GSM371638
Status
Public on Apr 30, 2009
Title
small RNA from S2 cells (S2-NP)
Sample type
SRA
Source name
Drosophila melanogaster S2 cells
Organism
Drosophila melanogaster
Characteristics
cell type: S2 cells
Biomaterial provider
Norbert Perrimon
Extracted molecule
total RNA
Extraction protocol
total RNA from S2R+ cells, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
size fractionation
Instrument model
Illumina Genome Analyzer
Description
Small RNA data.
Data processing
raw sequences were clipped by 3' linker sequences recognition, and select clipped sequences longer than 18 nt
Submission date
Feb 16, 2009
Last update date
May 15, 2019
Contact name
Nicolas Robine
E-mail(s)
robinen@mskcc.org
Organization name
Memorial Sloan Kettering Cancer Center
Department
Developmental Biology
Lab
Eric Lai
Street address
1275 York Avenue, Box 252
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL9058
Series (1)
GSE14849
small RNA from S2 cells (S2-NP)
Relations
SRA
SRX003967
BioSample
SAMN02195420
Data table header descriptions
SEQUENCE
COUNT
number of times small RNA was sequenced
Data table
SEQUENCE
COUNT
TGAATGCAGTGTGTATGATGGTTGTGAAGACCATAT
1
GCAAATCCGAAGAGGCTCTAG
1
ACCAGCGGAAGATGACTTCATC
1
ATTAAGCGTCGCGCGATTTGGTTTTGTCGCCA
1
TGAGCGGAGAACGAAAGAG
1
GGAGAGGTGTTCCGATTAATC
1
TGGGGTTGTTTTGGGAGATGATTTTGTGGGAACATT
1
TGCGATGATTTTGAAAGCTGCTGGTGGGGGCAATAT
1
GAAGTGCTTAATGAAGGTTTTCTTAAGCAACAATAA
1
TAGGAAAGTTGGGGTTGTTGAGTATGGAAGGTAAAT
1
TGGGAGCAGTTTGGAAGA
1
AAAGATATCTATGAAAGACGGA
1
CGTGTGGTAGATGGATGGTTGAGGGAG
1
TGAAACAGAAGGGTAAGGTGAGTG
1
GAAACTCCAATTGACGGACTC
1
TTGGGGACATCTTAAGAATAGTTA
1
TATCACGGTTTGCTATGAGAGG
1
TAAGATCGTTAGGAAAGGTGGTTTGGTGGGAACATT
1
GAGACATGGACAGGGCCGCCC
1
TAATAGGGACAGAGAAAGATG
1
Total number of rows:
3814663
Table truncated, full table size
103988 Kbytes
.
Supplementary data files not provided
SRA Run Selector
Processed data included within Sample table
Raw data are available in SRA
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