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Sample GSM37552 Query DataSets for GSM37552
Status Public on Dec 21, 2004
Title AGills
Sample type RNA
 
Channel 1
Source name Gills
Organism Danio rerio
Extracted molecule total RNA
 
Channel 2
Source name Gills
Organism Danio rerio
Extracted molecule total RNA
 
 
Description Gill RNA labeling:
Cy3: Hypoxia
Cy5: Normoxia
 
Submission date Dec 13, 2004
Last update date May 27, 2005
Contact name Christoph Peter Bagowski
E-mail(s) bagowski@rulbim.leidenuniv.nl
Phone ++31715274975
Organization name Leiden University
Street address
City Leiden
ZIP/Postal code 2333 AL
Country Netherlands
 
Platform ID GPL1743
Series (1)
GSE2069 Differential expression under hypoxia in zebrafish

Data table header descriptions
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE log ratio (log2 of PRE_VALUE)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE Ratio of Medians

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. VALUE Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) Log Ratio (635/532) F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags Normalize Autoflag PRE_VALUE
mwgzebrafish#00189 1970 3620 100 224 225 20 8 227 227 288 165 57 0 0 0 305 307 21 6 304 304 385 181 47 0 0 0 -0.667 1.111 1.275 2.974 0.759 0.727 80 560 100 -2 1 Error -3 1 -2 3 18030 24543 -0.382 -0.431 -50 0 0 -3
mwgzebrafish#00001 2220 3620 100 229 249 83 33 222 222 351 599 170 0 0 0 320 340 89 26 286 286 382 386 101 1 0 0 -2.2792843 0.5 0.976 0.741 3.435 1.396 0.933 80 560 100 41 81 -2.28 7 34 27 54 19934 27223 -0.17 -0.109 -50 0 0 0.206
mwgzebrafish#00193 2460 3630 100 606 673 264 39 236 236 258 122 47 92 68 0 515 557 166 29 271 271 287 121 42 82 51 0 0.6002703 1.528 1.512 1.476 1.414 1.547 0.875 80 560 100 614 723 0.601 370 244 437 286 53804 44582 3.402 2.231 0 0 0 1.516
mwgzebrafish#00005 2700 3600 50 252 262 75 28 183 183 199 67 33 50 16 0 366 340 65 19 237 237 257 86 33 66 8 0 -0.9023893 0.767 0.908 0.874 3.269 0.908 0.594 12 104 100 198 182 -0.903 69 129 79 103 3141 4075 0.94 0.965 0 0 0 0.535
mwgzebrafish#00197 2980 3610 100 179 199 62 31 156 156 179 235 131 1 0 0 282 304 66 21 222 222 244 181 74 5 0 0 -1.3845843 0.524 0.521 0.428 2.764 0.847 0.456 80 560 100 83 125 -1.383 23 60 43 82 15924 24326 0.085 0.331 0 0 0 0.383
mwgzebrafish#00009 3230 3610 90 184 200 55 27 155 155 180 269 149 0 0 0 329 331 71 21 240 240 264 205 77 5 0 0 -1.6170563 0.495 0.463 0.494 2.967 0.544 0.46 52 420 100 118 136 -1.618 29 89 45 91 10408 17187 0.074 0.327 0 0 0 0.326
mwgzebrafish#00201 3470 3600 100 163 164 23 14 156 156 165 37 22 11 0 0 281 285 43 15 252 252 258 41 15 40 15 0 -2.0528953 0.242 0.442 0.361 4.372 0.739 0.163 80 560 100 36 41 -2.051 7 29 8 33 13127 22773 -0.027 0.659 -50 0 0 0.241
mwgzebrafish#00013 3710 3610 110 227 850 3033 356 154 154 162 65 40 55 26 0 433 492 310 63 254 254 262 59 22 92 85 0 -1.2933593 2.924 0.438 0.511 2.479 12.529 0.397 80 656 100 252 934 -1.294 73 179 696 238 68002 39328 10.585 3.898 0 0 0 0.408
mwgzebrafish#00571 3970 3590 100 166 179 61 34 161 161 171 45 26 16 7 0 252 265 88 33 257 257 275 73 26 17 3 0 2.25 0.465 0.449 3.315 0.44 0.326 80 560 100 0 26 Error 5 -5 18 8 14343 21226 0.178 -0.137 -50 0 0 -1
mwgzebrafish#00381 4210 3600 100 321 345 127 36 171 171 180 46 25 86 70 0 635 667 178 26 317 317 312 75 24 96 90 0 -1.0831413 0.497 0.399 0.418 1.807 0.471 0.635 80 560 100 468 524 -1.084 150 318 174 350 27596 53321 3.587 4.733 0 0 0 0.472
mwgzebrafish#00575 4470 3590 100 254 270 103 38 174 174 210 78 37 50 18 0 495 545 246 45 327 327 440 281 63 38 7 0 -1.0709673 0.44 0.307 0.361 2.666 0.223 0.499 80 560 100 248 314 -1.07 80 168 96 218 21573 43589 0.769 0.374 -50 0 0 0.476
mwgzebrafish#00385 4720 3590 130 6487 6877 5042 73 161 161 183 71 38 85 81 0 10174 9781 6616 67 275 275 296 96 32 89 86 0 -0.6461123 0.707 0.72 0.582 2.218 0.721 0.936 120 918 100 16225 16222 -0.646 6326 9899 6716 9506 825278 1173702 94.282 98.802 0 0 0 0.639
mwgzebrafish#00579 4970 3590 120 214 234 80 34 156 156 172 65 37 46 20 0 331 344 96 27 202 202 224 94 41 61 35 0 -1.1520033 0.549 0.52 0.478 2.358 0.8 0.562 120 792 100 187 220 -1.153 58 129 78 142 28056 41312 0.954 1.277 0 0 0 0.45
mwgzebrafish#00389 5220 3590 140 7963 11200 11157 99 154 154 170 63 37 88 80 0 9992 13081 12704 97 192 192 212 64 30 92 87 0 -0.3273483 0.857 0.774 0.661 2.1 0.867 0.962 156 1053 100 17609 23935 -0.328 7809 9800 11046 12889 1747277 2040664 175.079 201.078 0 0 0 0.797
mwgzebrafish#00583 5460 3590 100 260 282 84 29 151 151 164 51 31 87 57 0 420 414 66 15 193 193 202 41 20 98 97 0 -1.0588943 0.593 0.514 0.505 1.79 0.649 0.634 80 560 100 336 352 -1.058 109 227 131 221 22528 33083 2.314 5.171 0 0 0 0.48
mwgzebrafish#00393 5740 3580 100 237 245 68 27 152 152 165 54 32 63 40 0 344 349 70 20 198 198 210 52 24 93 77 0 -0.7809093 0.616 0.558 0.544 2.412 0.998 0.562 80 550 100 231 244 -0.78 85 146 93 151 19609 27936 1.481 2.673 0 0 0 0.582
mwgzebrafish#00953 5910 3570 50 211 209 31 14 160 160 175 51 29 41 0 0 344 329 63 19 199 199 214 53 24 75 66 0 -1.5063533 0.377 0.352 0.322 1.979 0.545 0.298 12 104 100 196 179 -1.507 51 145 49 130 2509 3951 0.667 2.17 0 0 0 0.352
mwgzebrafish#00761 6240 3550 80 226 239 70 29 154 154 164 39 23 69 46 0 324 329 89 27 209 209 223 52 23 75 51 0 -0.6757653 0.708 0.703 0.653 2.528 0.641 0.491 52 340 100 187 205 -0.676 72 115 85 120 12437 17103 1.923 2.038 0 0 0 0.626
mwgzebrafish#00957 1970 3870 100 231 234 30 12 229 229 312 300 96 0 0 0 342 341 30 8 315 315 408 280 68 0 0 0 -3.7563313 0.192 0.438 0.526 3.18 0.91 0.638 80 560 100 29 31 -3.755 2 27 5 26 18706 27303 -0.26 -0.239 -50 0 0 0.074
mwgzebrafish#00765 2220 3870 100 427 448 186 41 175 175 274 359 131 28 2 0 767 752 250 33 246 246 328 290 88 80 43 0 -1.0469213 0.54 0.496 0.507 1.897 0.659 0.584 80 560 100 773 779 -1.048 252 521 273 506 35852 60177 0.485 1.462 0 0 0 0.484

Total number of rows: 15174

Table truncated, full table size 3524 Kbytes.




Supplementary data files not provided

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