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GEO accession:
Sample GSM37552
Query DataSets for GSM37552
Status
Public on Dec 21, 2004
Title
AGills
Sample type
RNA
Channel 1
Source name
Gills
Organism
Danio rerio
Extracted molecule
total RNA
Channel 2
Source name
Gills
Organism
Danio rerio
Extracted molecule
total RNA
Description
Gill RNA labeling:
Cy3: Hypoxia
Cy5: Normoxia
Submission date
Dec 13, 2004
Last update date
May 27, 2005
Contact name
Christoph Peter Bagowski
E-mail(s)
bagowski@rulbim.leidenuniv.nl
Phone
++31715274975
Organization name
Leiden University
Street address
City
Leiden
ZIP/Postal code
2333 AL
Country
Netherlands
Platform ID
GPL1743
Series (1)
GSE2069
Differential expression under hypoxia in zebrafish
Data table header descriptions
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE
log ratio (log2 of PRE_VALUE)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE
Ratio of Medians
Data table
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE
mwgzebrafish#00189
1970
3620
100
224
225
20
8
227
227
288
165
57
0
0
0
305
307
21
6
304
304
385
181
47
0
0
0
-0.667
1.111
1.275
2.974
0.759
0.727
80
560
100
-2
1
Error
-3
1
-2
3
18030
24543
-0.382
-0.431
-50
0
0
-3
mwgzebrafish#00001
2220
3620
100
229
249
83
33
222
222
351
599
170
0
0
0
320
340
89
26
286
286
382
386
101
1
0
0
-2.2792843
0.5
0.976
0.741
3.435
1.396
0.933
80
560
100
41
81
-2.28
7
34
27
54
19934
27223
-0.17
-0.109
-50
0
0
0.206
mwgzebrafish#00193
2460
3630
100
606
673
264
39
236
236
258
122
47
92
68
0
515
557
166
29
271
271
287
121
42
82
51
0
0.6002703
1.528
1.512
1.476
1.414
1.547
0.875
80
560
100
614
723
0.601
370
244
437
286
53804
44582
3.402
2.231
0
0
0
1.516
mwgzebrafish#00005
2700
3600
50
252
262
75
28
183
183
199
67
33
50
16
0
366
340
65
19
237
237
257
86
33
66
8
0
-0.9023893
0.767
0.908
0.874
3.269
0.908
0.594
12
104
100
198
182
-0.903
69
129
79
103
3141
4075
0.94
0.965
0
0
0
0.535
mwgzebrafish#00197
2980
3610
100
179
199
62
31
156
156
179
235
131
1
0
0
282
304
66
21
222
222
244
181
74
5
0
0
-1.3845843
0.524
0.521
0.428
2.764
0.847
0.456
80
560
100
83
125
-1.383
23
60
43
82
15924
24326
0.085
0.331
0
0
0
0.383
mwgzebrafish#00009
3230
3610
90
184
200
55
27
155
155
180
269
149
0
0
0
329
331
71
21
240
240
264
205
77
5
0
0
-1.6170563
0.495
0.463
0.494
2.967
0.544
0.46
52
420
100
118
136
-1.618
29
89
45
91
10408
17187
0.074
0.327
0
0
0
0.326
mwgzebrafish#00201
3470
3600
100
163
164
23
14
156
156
165
37
22
11
0
0
281
285
43
15
252
252
258
41
15
40
15
0
-2.0528953
0.242
0.442
0.361
4.372
0.739
0.163
80
560
100
36
41
-2.051
7
29
8
33
13127
22773
-0.027
0.659
-50
0
0
0.241
mwgzebrafish#00013
3710
3610
110
227
850
3033
356
154
154
162
65
40
55
26
0
433
492
310
63
254
254
262
59
22
92
85
0
-1.2933593
2.924
0.438
0.511
2.479
12.529
0.397
80
656
100
252
934
-1.294
73
179
696
238
68002
39328
10.585
3.898
0
0
0
0.408
mwgzebrafish#00571
3970
3590
100
166
179
61
34
161
161
171
45
26
16
7
0
252
265
88
33
257
257
275
73
26
17
3
0
2.25
0.465
0.449
3.315
0.44
0.326
80
560
100
0
26
Error
5
-5
18
8
14343
21226
0.178
-0.137
-50
0
0
-1
mwgzebrafish#00381
4210
3600
100
321
345
127
36
171
171
180
46
25
86
70
0
635
667
178
26
317
317
312
75
24
96
90
0
-1.0831413
0.497
0.399
0.418
1.807
0.471
0.635
80
560
100
468
524
-1.084
150
318
174
350
27596
53321
3.587
4.733
0
0
0
0.472
mwgzebrafish#00575
4470
3590
100
254
270
103
38
174
174
210
78
37
50
18
0
495
545
246
45
327
327
440
281
63
38
7
0
-1.0709673
0.44
0.307
0.361
2.666
0.223
0.499
80
560
100
248
314
-1.07
80
168
96
218
21573
43589
0.769
0.374
-50
0
0
0.476
mwgzebrafish#00385
4720
3590
130
6487
6877
5042
73
161
161
183
71
38
85
81
0
10174
9781
6616
67
275
275
296
96
32
89
86
0
-0.6461123
0.707
0.72
0.582
2.218
0.721
0.936
120
918
100
16225
16222
-0.646
6326
9899
6716
9506
825278
1173702
94.282
98.802
0
0
0
0.639
mwgzebrafish#00579
4970
3590
120
214
234
80
34
156
156
172
65
37
46
20
0
331
344
96
27
202
202
224
94
41
61
35
0
-1.1520033
0.549
0.52
0.478
2.358
0.8
0.562
120
792
100
187
220
-1.153
58
129
78
142
28056
41312
0.954
1.277
0
0
0
0.45
mwgzebrafish#00389
5220
3590
140
7963
11200
11157
99
154
154
170
63
37
88
80
0
9992
13081
12704
97
192
192
212
64
30
92
87
0
-0.3273483
0.857
0.774
0.661
2.1
0.867
0.962
156
1053
100
17609
23935
-0.328
7809
9800
11046
12889
1747277
2040664
175.079
201.078
0
0
0
0.797
mwgzebrafish#00583
5460
3590
100
260
282
84
29
151
151
164
51
31
87
57
0
420
414
66
15
193
193
202
41
20
98
97
0
-1.0588943
0.593
0.514
0.505
1.79
0.649
0.634
80
560
100
336
352
-1.058
109
227
131
221
22528
33083
2.314
5.171
0
0
0
0.48
mwgzebrafish#00393
5740
3580
100
237
245
68
27
152
152
165
54
32
63
40
0
344
349
70
20
198
198
210
52
24
93
77
0
-0.7809093
0.616
0.558
0.544
2.412
0.998
0.562
80
550
100
231
244
-0.78
85
146
93
151
19609
27936
1.481
2.673
0
0
0
0.582
mwgzebrafish#00953
5910
3570
50
211
209
31
14
160
160
175
51
29
41
0
0
344
329
63
19
199
199
214
53
24
75
66
0
-1.5063533
0.377
0.352
0.322
1.979
0.545
0.298
12
104
100
196
179
-1.507
51
145
49
130
2509
3951
0.667
2.17
0
0
0
0.352
mwgzebrafish#00761
6240
3550
80
226
239
70
29
154
154
164
39
23
69
46
0
324
329
89
27
209
209
223
52
23
75
51
0
-0.6757653
0.708
0.703
0.653
2.528
0.641
0.491
52
340
100
187
205
-0.676
72
115
85
120
12437
17103
1.923
2.038
0
0
0
0.626
mwgzebrafish#00957
1970
3870
100
231
234
30
12
229
229
312
300
96
0
0
0
342
341
30
8
315
315
408
280
68
0
0
0
-3.7563313
0.192
0.438
0.526
3.18
0.91
0.638
80
560
100
29
31
-3.755
2
27
5
26
18706
27303
-0.26
-0.239
-50
0
0
0.074
mwgzebrafish#00765
2220
3870
100
427
448
186
41
175
175
274
359
131
28
2
0
767
752
250
33
246
246
328
290
88
80
43
0
-1.0469213
0.54
0.496
0.507
1.897
0.659
0.584
80
560
100
773
779
-1.048
252
521
273
506
35852
60177
0.485
1.462
0
0
0
0.484
Total number of rows:
15174
Table truncated, full table size
3524 Kbytes
.
Supplementary data files not provided
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