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Sample GSM37579 Query DataSets for GSM37579
Status Public on Dec 21, 2004
Title GsGills
Sample type RNA
 
Channel 1
Source name Gills
Organism Danio rerio
Extracted molecule total RNA
 
Channel 2
Source name Gills
Organism Danio rerio
Extracted molecule total RNA
 
 
Description labeling:
Cy3 = hypoxia
Cy5 = normoxia
 
Submission date Dec 14, 2004
Last update date May 27, 2005
Contact name Christoph Peter Bagowski
E-mail(s) bagowski@rulbim.leidenuniv.nl
Phone ++31715274975
Organization name Leiden University
Street address
City Leiden
ZIP/Postal code 2333 AL
Country Netherlands
 
Platform ID GPL1743
Series (1)
GSE2069 Differential expression under hypoxia in zebrafish

Data table header descriptions
ID_REF
X
Y
Dia.
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
VALUE log ratio (log2 of PRE_VALUE)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
PRE_VALUE ratio of median

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. VALUE Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) Log Ratio (635/532) F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags Normalize Autoflag PRE_VALUE
mwgzebrafish#00189 2030 3200 50 241 245 53 21 127 127 129 20 15 100 91 0 150 142 41 28 47 47 48 8 16 100 100 0 0.1466553 1.242 1.292 1.272 1.412 1.352 0.805 12 104 100 217 213 0.146 114 103 118 95 2938 1707 5.8 11.75 -50 0 0 1.107
mwgzebrafish#00001 2290 3190 120 144 223 692 310 129 129 155 555 358 1 0 0 80 82 22 26 50 50 56 37 66 27 4 0 -1.0000003 2.938 0.684 0.681 3.199 29.85 0.026 120 789 100 45 126 -1 15 30 94 32 26701 9898 0.123 0.703 0 0 0 0.5
mwgzebrafish#00193 2540 3190 140 203 216 65 30 129 129 138 51 36 62 37 0 85 89 26 29 50 50 57 30 52 56 22 0 1.0799753 2.231 2.141 1.993 1.862 2.169 0.616 156 1068 100 109 126 1.08 74 35 87 39 33689 13959 1.529 1.067 0 0 0 2.114
mwgzebrafish#00005 2800 3180 70 134 149 36 24 125 125 128 23 17 37 21 0 68 69 11 15 49 49 51 11 21 75 34 0 -1.0770413 1.2 0.981 0.97 3.022 3.672 0.174 32 236 100 28 44 -1.078 9 19 24 20 4777 2198 0.913 1.636 0 0 0 0.474
mwgzebrafish#00197 3020 3190 140 140 156 83 53 126 126 128 19 14 44 21 0 67 69 21 30 47 47 49 8 16 77 59 0 -0.5145733 1.364 1.162 1.073 3.435 4.191 0.266 156 1059 100 34 52 -0.515 14 20 30 22 24356 10757 1.474 2.5 0 0 0 0.7
mwgzebrafish#00009 3290 3170 100 145 155 54 34 125 125 131 62 47 7 3 0 72 77 26 33 47 47 49 13 26 86 46 0 -0.3219283 1 0.909 0.805 2.167 2.243 0.468 80 560 100 45 60 -0.322 20 25 30 30 12393 6174 0.387 2.154 0 0 0 0.8
mwgzebrafish#00201 3540 3170 100 129 137 47 34 124 124 172 688 400 0 0 0 57 61 20 32 47 47 52 68 130 2 1 0 -1.0000003 0.929 1.207 1.07 2.964 3.925 0.889 80 560 100 15 27 -1 5 10 13 14 10949 4885 -0.051 0.132 -50 0 0 0.5
mwgzebrafish#00013 3810 3190 110 149 152 23 15 126 126 132 34 25 18 2 0 80 85 23 27 47 47 50 14 28 95 63 0 -0.5207693 0.684 0.739 0.649 2.104 2.461 0.174 80 645 100 56 64 -0.521 23 33 26 38 12131 6780 0.588 2.5 0 0 0 0.697
mwgzebrafish#00571 4040 3170 120 146 162 59 36 125 125 133 81 60 9 7 0 96 101 40 39 47 47 49 17 34 86 75 0 -1.2209503 0.685 0.553 0.459 2.821 4.531 0.355 120 795 100 70 91 -1.222 21 49 37 54 19483 12133 0.358 3.059 0 0 0 0.429
mwgzebrafish#00381 4290 3170 130 169 176 41 23 125 125 128 28 21 69 34 0 109 113 39 34 46 46 48 9 18 99 92 0 -0.5187013 0.761 0.745 0.689 2.081 2.102 0.657 120 920 100 107 118 -0.518 44 63 51 67 21110 13580 1.714 7.222 0 0 0 0.698
mwgzebrafish#00575 4570 3150 50 146 149 34 22 129 129 133 19 14 41 16 0 66 70 11 15 52 52 53 9 16 83 41 0 0.2797683 1.111 1.077 1.295 2.095 3.679 0.102 12 104 100 31 38 0.28 17 14 20 18 1791 836 0.842 1.889 -50 0 0 1.214
mwgzebrafish#00385 4800 3170 140 2924 2835 1383 48 125 125 132 52 39 100 98 0 966 955 469 49 45 45 47 14 29 99 98 0 1.6035973 2.978 2.933 3.028 1.449 3.035 0.94 156 1040 100 3720 3620 1.604 2799 921 2710 910 442308 148935 51.981 64.857 0 0 0 3.039
mwgzebrafish#00579 5050 3160 140 166 265 294 110 127 127 155 132 85 19 13 0 89 130 118 90 47 47 62 69 111 26 15 0 -0.1062493 1.663 1 0.961 2.648 2.584 0.715 156 983 100 81 221 -0.107 39 42 138 83 41270 20337 0.833 0.986 -50 0 0 0.929
mwgzebrafish#00389 5290 3170 140 10007 9472 5040 53 131 131 156 114 73 98 97 0 2617 2444 1277 52 48 48 59 48 81 98 96 0 1.9426083 3.899 3.875 3.977 1.941 3.982 0.964 156 1001 100 12445 11737 1.943 9876 2569 9341 2396 1477636 381328 81.719 49.688 0 0 0 3.844
mwgzebrafish#00583 5540 3160 130 149 151 20 13 125 125 132 36 27 28 1 0 101 100 20 20 45 45 49 17 34 97 81 0 -1.2209503 0.473 0.458 0.422 2.044 1.278 0.368 120 914 100 80 81 -1.222 24 56 26 55 18087 12004 0.528 3 0 0 0 0.429
mwgzebrafish#00393 5800 3140 110 130 133 18 13 125 125 127 18 14 22 6 0 62 63 10 15 45 45 47 9 19 75 46 0 -1.7661123 0.444 0.685 0.574 2.981 2.892 0.114 80 656 100 22 26 -1.766 5 17 8 18 10646 5012 0.333 1.778 0 0 0 0.294
mwgzebrafish#00953 6020 3170 50 237 241 75 31 126 126 126 14 11 91 75 0 165 145 50 34 45 45 46 8 17 100 100 0 -0.1124753 1.15 1.076 0.985 1.662 1.391 0.812 12 104 100 231 215 -0.112 111 120 115 100 2888 1741 8.214 12.375 -50 0 0 0.925
mwgzebrafish#00761 6280 3160 100 149 165 55 33 124 124 127 24 18 52 27 0 73 85 42 49 46 46 47 9 19 96 70 0 -0.1109163 1.051 1.093 0.945 2.121 1.442 0.616 80 560 100 52 80 -0.111 25 27 41 39 13165 6802 1.583 4.222 0 0 0 0.926
mwgzebrafish#00957 2040 3430 130 160 163 31 19 125 125 128 20 15 73 43 0 100 99 21 21 48 48 50 8 16 98 97 0 -0.5713223 0.745 0.792 0.665 2.056 1.24 0.393 120 911 100 87 89 -0.571 35 52 38 51 19500 11880 1.75 6.125 0 0 0 0.673
mwgzebrafish#00765 2300 3430 130 201 203 44 21 126 126 130 19 14 92 80 0 91 97 36 37 49 49 51 10 19 97 87 0 0.8367323 1.604 1.689 1.516 1.961 1.599 0.542 120 868 100 117 125 0.837 75 42 77 48 24371 11692 3.842 4.6 0 0 0 1.786

Total number of rows: 15173

Table truncated, full table size 3374 Kbytes.




Supplementary data files not provided

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