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Sample GSM378933 Query DataSets for GSM378933
Status Public on Mar 14, 2009
Title bcl6 in OCI-LY1 replicate2
Sample type genomic
Channel 1
Source name genomic DNA (input)
Organism Homo sapiens
Characteristics type: Input
Extracted molecule genomic DNA
Extraction protocol sonicated genomic DNA, then purify by qiagen column
Label Cy3
Label protocol described in
Channel 2
Source name chromatinIP products which are genomic regions bound by BCL6
Organism Homo sapiens
Characteristics cell line: DLBCL
type: ChIP
Extracted molecule genomic DNA
Extraction protocol chromatinIP products which are genomic regions bound by BCL6, then purify by qiagen column.
Label Cy5
Label protocol described in
Hybridization protocol described in
Scan protocol described in
Description chip-on-chip is performing in OCI-LY1 DLBCL cell line by BCL6 antibody
Data processing Take all the probes in the promoter region and do Log2 transformed IP/INPUT(Cy5/Cy3). Then use the maximal summary of three connected probes as the bound intensity of the promoter.
Submission date Mar 10, 2009
Last update date Mar 18, 2009
Contact name weimin ci
Phone 12127467622
Organization name weill cornell college of medicine
Department medicine
Lab ari melnick
Street address 1300 York ave
City new york
State/province NY
ZIP/Postal code 10065
Country USA
Platform ID GPL8275
Series (1)
GSE15179 ChIP-on-chip of BCL6

Data table header descriptions
VALUE Log2 transformed IP/INPUT(CY5/CY3)

Data table
HSAP0406S00000003 -0.908812228
HSAP0406S00000005 0.853635808
HSAP0406S00000008 -0.843585222
HSAP0406S00000009 -0.81518074
HSAP0406S00000010 -0.851390217
HSAP0406S00000011 -0.71956686
HSAP0406S00000012 -1.520247334
HSAP0406S00000013 -1.3247492
HSAP0406S00000014 -0.948448513
HSAP0406S00000015 -1.741180214
HSAP0406S00000016 -1.497639701
HSAP0406S00000017 -0.577234486
HSAP0406S00000018 0.01646436
HSAP0406S00000019 0.716952784
HSAP0406S00000020 -0.574194867
HSAP0406S00000022 -0.850547602
HSAP0406S00000025 -0.255386665
HSAP0406S00000027 -0.372922179
HSAP0406S00000029 -1.257469647
HSAP0406S00000031 -1.207779037

Total number of rows: 24134

Table truncated, full table size 718 Kbytes.

Supplementary file Size Download File type/resource
GSM378933_ly1_2.532.txt.gz 6.2 Mb (ftp)(http) TXT
GSM378933_ly1_2.635.txt.gz 6.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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