|
| Status |
Public on Jun 25, 2019 |
| Title |
PID055 |
| Sample type |
genomic |
| |
|
| Source name |
PID055
|
| Organism |
Homo sapiens |
| Characteristics |
gender: male
sample type: monocyte
disease state: insulin sensitive
condition: HIV
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from monocytes using the Qiagen AllPrep DNA/RNA mini kit (ThermoScientific) following manufacturer's recommendations
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulfite DNA was amplified, fragmented and hybridised to Illumina HumanMethylation 450K Beadchip following Illumina's standard protocol
|
| Scan protocol |
arrays were imaged using iScan SQ instrument (Illumina) following recommended settings
|
| Description |
genomic DNA from monocytes
insulin sensitive monocyte
|
| Data processing |
RnBeads 0.99.10
|
| |
|
| Submission date |
May 22, 2019 |
| Last update date |
Jun 27, 2019 |
| Contact name |
Christian Ka'ikekuponoaloha Dye |
| E-mail(s) |
ckdye@hawaii.edu, ckd2132@cumc.columbia.edu
|
| Phone |
8089896891
|
| Organization name |
University of Hawaii at Manoa
|
| Department |
Native Hawaiian Health
|
| Lab |
Maunakea Lab
|
| Street address |
641 Ilalo St. BSB 222K
|
| City |
Honolulu |
| State/province |
HI |
| ZIP/Postal code |
96813 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE131627 |
Comparative DNA methylomic analyses reveal insight into potential origins of novel monocyte epigenetic biomarkers of insulin resistance |
|
