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Sample GSM38162 Query DataSets for GSM38162
Status Public on Feb 08, 2005
Title MM-004
Sample type RNA
 
Source name CD138+ plasma cells obtained from bone marrow of MM patient
Organism Homo sapiens
Extracted molecule total RNA
 
Description gene expression profiles of purified plasma cells (PCs) obtained from a multiple myeloma patient (MM). PCs were purified from bone marrow samples, after red blood cell lysis with 0.86% ammonium chloride, using CD138 immunomagnetic microbeads. The purity of the positively selected PCs (95%) was assessed by morphology and flow cytometry. 5 micrograms of total RNA was processed and hybridized to the Affymetrix HG-U133A chip following the manufacturer's instructions. After scanning, the image was processed using Affymetrix MicroArray Suite (MAS) 5.0 software to generate gene expression intensity values. Arrays normalization was performed normalizing the signals to the target intensity of TGT=100.
Keywords = Gene expression profiling
Keywords = IGH translocations
Keywords = MGUS
Keywords = Multiple Myeloma
Keywords = Plasma Cell Leukemia
 
Submission date Dec 27, 2004
Last update date May 27, 2005
Contact name Luca Agnelli
E-mail(s) luca.agnelli@istitutotumori.mi.it, luca.agnelli@gmail.com
Phone +390223903581
Organization name IRCCS Istituto Nazionale dei Tumori
Department Department of Advanced Diagnostics
Street address Venezian 1
City MILAN
ZIP/Postal code 20133
Country Italy
 
Platform ID GPL96
Series (1)
GSE2113 Plasma cell dyscrasias expression profiles associated with distinct IGH translocations in multiple myeloma

Data table header descriptions
ID_REF Affymetrix probes number ID
VALUE Average difference intensity (See Affymetrix Literature)
ABS_CALL The call in the absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE the detection p-value in the absolute analysis used to assign the call present (P), absent (A) or marginal (M)

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 79.1 P 0.006871
AFFX-BioB-M_at 147.1 P 0.000857
AFFX-BioB-3_at 42.8 P 0.021902
AFFX-BioC-5_at 215.8 P 0.000225
AFFX-BioC-3_at 121.9 P 0.000754
AFFX-BioDn-5_at 172.9 P 0.000662
AFFX-BioDn-3_at 1031.3 P 0.000297
AFFX-CreX-5_at 2021.8 P 0.000044
AFFX-CreX-3_at 2885.6 P 0.000044
AFFX-DapX-5_at 7.7 A 0.216524
AFFX-DapX-M_at 13.6 A 0.147939
AFFX-DapX-3_at 11.7 A 0.699394
AFFX-LysX-5_at 2.7 A 0.48511
AFFX-LysX-M_at 9.8 A 0.574038
AFFX-LysX-3_at 7.1 A 0.39692
AFFX-PheX-5_at 1.7 A 0.860518
AFFX-PheX-M_at 0.9 A 0.814869
AFFX-PheX-3_at 4.4 A 0.686277
AFFX-ThrX-5_at 3.3 A 0.672921
AFFX-ThrX-M_at 12.5 A 0.287743

Total number of rows: 22283

Table truncated, full table size 578 Kbytes.




Supplementary file Size Download File type/resource
GSM38162.CEL.gz 3.4 Mb (ftp)(http) CEL

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