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Sample GSM384019 Query DataSets for GSM384019
Status Public on Mar 20, 2009
Title SAGE_Vascular_normal_CS_control
Sample type SAGE
Anchor NlaIII
Tag Count 51642
Tag Length 10
 
Source name vascular, normal, endothelium, non-normalized, short sage, short term culture
Organism Homo sapiens
Characteristics organ/tissue: vascular
tissue preparation: short term culture
sex: unknown
cell type: endothelium
Biomaterial provider Clonetics, San Diego, CA
Extracted molecule total RNA
Extraction protocol N/A
 
Description CGAP_Numeric_library_ID: 29
Tagging_enzyme: BsmF I
Old_library_name: SAGE_Duke_HMVEC
Library_producer: Anita Lal
Laboratory: Gregory Riggins, Duke University Medical Center
References: A. Lal et al., Cancer Res 59, 5403-7 (1999) [PUBMED=10554005]
 
Submission date Mar 19, 2009
Last update date Mar 20, 2009
Contact name Cancer Genome Anatomy Project CGAP
E-mail(s) cgapbs-r@mail.nih.gov
Phone 301-496-1550
URL http://cgap.nci.nih.gov/
Organization name National Cancer Institute
Department Cancer Genome Anatomy Project
Street address
City Bethesda
State/province MD
ZIP/Postal code 20852
Country USA
 
Platform ID GPL4
Series (2)
GSE14 Cancer Genome Anatomy Project (CGAP) SAGE Libraries
GSE15309 Cancer Genome Anatomy Project (CGAP) Human SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 129 2497.97
AAAAAAAAAC 1 19.36
AAAAAAAAAG 4 77.46
AAAAAAAACC 1 19.36
AAAAAAAAGA 1 19.36
AAAAAAAAGG 1 19.36
AAAAAAACAA 1 19.36
AAAAAAACTA 1 19.36
AAAAAAAGAA 4 77.46
AAAAAAAGCC 1 19.36
AAAAAAATAA 1 19.36
AAAAAAATCA 1 19.36
AAAAAAATTT 1 19.36
AAAAAACACA 1 19.36
AAAAAACATT 2 38.73
AAAAAACCCA 1 19.36
AAAAAACCCT 1 19.36
AAAAAACTCC 4 77.46
AAAAAAGAAA 1 19.36
AAAAAAGATG 1 19.36

Total number of rows: 20562

Table truncated, full table size 383 Kbytes.




Supplementary data files not provided

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