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Sample GSM386345 Query DataSets for GSM386345
Status Public on Jun 02, 2009
Title SkBr3 amplified using the one cycle amplification kit from Affymetrix
Sample type RNA
Source name SkBr3, human breast cancer cell line
Organism Homo sapiens
Characteristics protocol: one cycle amplification kit from Affymetrix
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen)
Label biotin
Label protocol Biotinylated targets were prepared according to manufacturer's instructions (Affymetrix)
Hybridization protocol Hybridization mixture was prepared according to Affymetrix procedures
Scan protocol GeneChips were scanned using a 7G scanner (Affymetrix)
Description no additional information
Data processing MAS5.0
Submission date Mar 25, 2009
Last update date Aug 28, 2018
Contact name charles decraene
Organization name Institut Curie
Street address 26 rue d'ULM
City Paris
ZIP/Postal code 75248 cedex 05
Country France
Platform ID GPL570
Series (1)
GSE15398 Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling
Reanalyzed by GSE119087

Data table header descriptions
VALUE done by mas5.0
ABS_CALL done by mas5.0
DETECTION P-VALUE done by mas5.0

Data table
AFFX-BioB-5_at 145.056 P 0.000445901
AFFX-BioB-M_at 226.07 P 4.42873e-05
AFFX-BioB-3_at 136.18 P 9.4506e-05
AFFX-BioC-5_at 389.232 P 5.16732e-05
AFFX-BioC-3_at 527.798 P 4.42873e-05
AFFX-BioDn-5_at 1140.89 P 4.42873e-05
AFFX-BioDn-3_at 2372.39 P 6.02111e-05
AFFX-CreX-5_at 5427.03 P 5.16732e-05
AFFX-CreX-3_at 6647.73 P 4.42873e-05
AFFX-DapX-5_at 174.108 P 5.16732e-05
AFFX-DapX-M_at 273.248 P 0.000662269
AFFX-DapX-3_at 315.085 P 0.00010954
AFFX-LysX-5_at 13.4774 P 0.0336773
AFFX-LysX-M_at 34.6897 P 0.0219019
AFFX-LysX-3_at 107.015 P 0.00010954
AFFX-PheX-5_at 34.8257 P 0.000224668
AFFX-PheX-M_at 39.6249 P 0.0020226
AFFX-PheX-3_at 32.4503 P 0.000856509
AFFX-ThrX-5_at 46.8409 P 0.000296708
AFFX-ThrX-M_at 57.4983 P 9.4506e-05

Total number of rows: 54675

Table truncated, full table size 1637 Kbytes.

Supplementary file Size Download File type/resource
GSM386345.CEL.gz 8.2 Mb (ftp)(http) CEL
GSM386345.CHP.gz 486.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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