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Sample GSM386469 Query DataSets for GSM386469
Status Public on Jun 02, 2009
Title HCC38 amplified using WT-Amplification™ Pico kit (Nugen)
Sample type RNA
Source name HCC38, human breast cancer cell line
Organism Homo sapiens
Characteristics protocol: WT-Amplification™ Pico kit (Nugen)
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen)
Label biotin
Label protocol FL-Ovation™ cDNA Biotin Module V2 (Nugen)
Hybridization protocol Hybridization mixture was prepared according to Nugen and Affymetrix procedures
Scan protocol GeneChips were scanned using a 7G scanner (Affymetrix)
Description no additional information
Data processing MAS5.0
Submission date Mar 25, 2009
Last update date Aug 28, 2018
Contact name charles decraene
Organization name Institut Curie
Street address 26 rue d'ULM
City Paris
ZIP/Postal code 75248 cedex 05
Country France
Platform ID GPL570
Series (1)
GSE15398 Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling
Reanalyzed by GSE119087

Data table header descriptions
VALUE done by mas5.0
ABS_CALL done by mas5.0
DETECTION P-VALUE done by mas5.0

Data table
AFFX-BioB-5_at 1062.25 P 4.42873e-05
AFFX-BioB-M_at 2089.84 P 4.42873e-05
AFFX-BioB-3_at 1814.7 P 4.42873e-05
AFFX-BioC-5_at 3278.59 P 4.42873e-05
AFFX-BioC-3_at 1899.82 P 4.42873e-05
AFFX-BioDn-5_at 6742.8 P 4.42873e-05
AFFX-BioDn-3_at 11406.5 P 4.42873e-05
AFFX-CreX-5_at 19326.2 P 5.16732e-05
AFFX-CreX-3_at 20059 P 4.42873e-05
AFFX-DapX-5_at 2.15707 A 0.712274
AFFX-DapX-M_at 0.461822 A 0.996788
AFFX-DapX-3_at 0.645312 A 0.824693
AFFX-LysX-5_at 6.58965 A 0.368394
AFFX-LysX-M_at 0.562382 A 0.993133
AFFX-LysX-3_at 0.309151 A 0.991569
AFFX-PheX-5_at 1.24244 A 0.712307
AFFX-PheX-M_at 5.85511 A 0.794288
AFFX-PheX-3_at 2.43528 A 0.932322
AFFX-ThrX-5_at 5.90798 A 0.368382
AFFX-ThrX-M_at 6.71344 A 0.514893

Total number of rows: 54675

Table truncated, full table size 1643 Kbytes.

Supplementary file Size Download File type/resource
GSM386469.CEL.gz 7.0 Mb (ftp)(http) CEL
GSM386469.CHP.gz 507.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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