|
Status |
Public on Jun 02, 2009 |
Title |
wild type, biological rep3 |
Sample type |
RNA |
|
|
Source name |
Wild type
|
Organism |
Arabidopsis thaliana |
Characteristics |
ecotype: Col-0 tissue: vegetative part age: stage 1.03 genotype: WT
|
Growth protocol |
plant were grown on MS medium under 16 h light/ 8 h dark cycle at 22°C
|
Extracted molecule |
total RNA |
Extraction protocol |
RNeasy plant mini kit (Qiagen) , according to manufacturer protocol
|
Label |
biotin
|
Label protocol |
Standard affymetrix protocol
|
|
|
Hybridization protocol |
Standard affymetrix protocol
|
Scan protocol |
Standard affymetrix protocol
|
Description |
Wild type, vegetative part of seedlings at stage 1.03
|
Data processing |
Expression data were processed using RMA (background correction, normalization and summarization) in BioConductor (Gentleman et al. 2004; Irizarry et al. 2003a; 2003b). An alternative CDF (tinesath1cdf) was used, where each probe is assigned uniquely to one transcript and is excluded if it aligns to a different transcript with 24 or more perfect matches (Casneuf et al. 2007; http://www.bioconductor.org/packages/release/data/experiment/html/tinesath1cdf.html)
|
|
|
Submission date |
Apr 17, 2009 |
Last update date |
Jun 02, 2009 |
Contact name |
Nathalie Gonzalez |
E-mail(s) |
nagon@psb.vib-ugent.be
|
Phone |
+32 (0)9 331 39 56
|
Organization name |
VIB
|
Department |
Plant System Biology
|
Lab |
System Biology of Yield
|
Street address |
Technologiepark 927
|
City |
Gent |
ZIP/Postal code |
9052 |
Country |
Belgium |
|
|
Platform ID |
GPL8455 |
Series (2) |
GSE15722 |
Chromosomal duplication in the grandifolia-D mutants of Arabidopsis thaliana, expression data |
GSE15726 |
Chromosomal duplication in the grandifolia-D mutants of Arabidopsis thaliana |
|