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Status |
Public on Aug 20, 2009 |
Title |
CD4-HDAC6 |
Sample type |
SRA |
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Source name |
CD4+ T cell
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Organism |
Homo sapiens |
Characteristics |
cell type: CD4+ T cell antibody: anti-HDAC6 Ab sirna: n/a treatment: n/a
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Treatment protocol |
Treatment protocol as described in Wang et al., 2009
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Growth protocol |
Growth protocol as described in Wang et al., 2009
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Extracted molecule |
genomic DNA |
Extraction protocol |
Extract protocol as described in Wang et al., 2009
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
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Description |
CD4 HDAC6 ChIP-Seq, genomic DNA
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Data processing |
Sequence reads were obtained and mapped to the human (March 2006, hg18) genomes using the Illumina Genome Analyzer Pipeline. More details as described in Wang et al., 2009
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Submission date |
Apr 18, 2009 |
Last update date |
May 15, 2019 |
Contact name |
Chongzhi Zang |
Organization name |
University of Virginia
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Street address |
P. O. Box 800717
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City |
Charlottesville |
State/province |
VA |
ZIP/Postal code |
22908 |
Country |
USA |
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Platform ID |
GPL9052 |
Series (1) |
GSE15735 |
Genome-wide mapping of HATs and HDACs in human CD4+ T cells |
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Relations |
SRA |
SRX017706 |
BioSample |
SAMN00009881 |
Supplementary file |
Size |
Download |
File type/resource |
GSM393953_CD4-HDAC6-vstep.txt.gz |
13.5 Mb |
(ftp)(http) |
TXT |
GSM393953_CD4-HDAC6.bed.gz |
114.3 Mb |
(ftp)(http) |
BED |
GSM393953_CD4-HDAC6_genes.txt.gz |
21.7 Kb |
(ftp)(http) |
TXT |
GSM393953_CD4-HDAC6_islands.bed.gz |
167.2 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
Processed data provided as supplementary file |
Raw data are available in SRA |
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