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Sample GSM40092 Query DataSets for GSM40092
Status Public on Nov 30, 2005
Title M2 Cy3
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name Isolated tumor DNA, derived from cerebellar medulloblastoma.
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Comparison of normal versus tumor DNA (medulloblastoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH). Every experiment was performed as dye-swap.
 
Submission date Jan 28, 2005
Last update date Oct 06, 2005
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL1432
Series (1)
GSE2139 human medulloblastoma

Data table header descriptions
ID_REF
Block In which block a single spot is localized. The block count starts from the left top to the right hand side and ends at the right bottom of the slide.
Column In which column a single spot is localized. The count starts from the left top downwards and ends at the right bottom of a single block (Y-direction).
Row In which row a single spot is localized. The count starts from the left top to the right hand side and ends at the right bottom of a single block (X-direction).
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF Block Column Row VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 29 1 1 0.142 7961 7680 1148 174 177 43 52 376 7184 6918 1284 128 129 27 52 376
G000001-2 29 2 1 0.185 7997 7575 1197 173 176 42 52 371 7008 6680 1413 126 126 25 52 371
G000001-3 29 3 1 0.105 7634 7565 581 175 176 41 52 370 7060 6925 774 123 125 26 52 370
G000002-1 21 1 1 0.053 18739 17465 3500 173 175 39 52 327 18026 17033 3018 126 127 26 52 327
G000002-2 21 2 1 0.079 18244 16815 3473 169 169 41 52 370 17241 16101 3498 126 127 25 52 370
G000002-3 21 3 1 0.083 18095 16770 3339 166 170 42 52 378 17056 16342 2753 125 127 25 52 378
G000003-1 13 1 1 0.052 12882 12196 2084 159 162 38 52 320 12392 11739 2233 118 120 25 52 320
G000003-2 13 2 1 0.066 12976 11504 3221 167 167 38 52 307 12353 10994 3349 120 120 25 52 307
G000003-3 13 3 1 -0.014 12684 11601 2963 163 165 40 52 314 12762 11220 3280 118 123 62 52 314
G000004-1 5 1 1 0.131 18877 18051 2792 169 172 46 52 384 17203 16686 2272 119 120 25 52 384
G000004-2 5 2 1 0.158 18546 17048 3612 165 168 39 52 363 16589 15386 3687 118 119 25 52 363
G000004-3 5 3 1 0.136 17055 16019 3021 167 168 37 52 372 15487 14438 3422 118 120 24 52 372
G000005-1 29 4 1 0.027 29774 27754 6125 177 178 40 52 379 29169 26724 7373 129 130 25 52 379
G000005-2 29 5 1 0.04 30547 29262 4336 183 186 42 52 315 29667 28562 4575 132 135 31 52 315
G000005-3 29 6 1 0.011 28601 27385 4295 179 183 45 52 314 28332 27219 4180 133 134 29 52 314
G000006-1 21 4 1 0.089 21690 19610 4720 172 174 41 52 362 20354 18659 3719 124 125 24 52 362
G000006-2 21 5 1 0.106 20801 18938 4226 167 172 39 52 362 19303 17440 4471 129 129 25 52 362
G000006-3 21 6 1 0.06 20614 18842 4671 168 172 38 52 307 19742 17901 4562 130 132 26 52 307
G000007-1 13 4 1 0.053 12932 12032 2362 158 164 37 52 314 12438 11331 2574 121 126 62 52 314
G000007-2 13 5 1 0.086 13222 11630 3329 160 162 38 52 363 12430 11299 2741 122 123 24 52 363

Total number of rows: 19311

Table truncated, full table size 1738 Kbytes.




Supplementary data files not provided

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