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Sample GSM40095 Query DataSets for GSM40095
Status Public on Nov 30, 2005
Title M3 Cy5
Sample type genomic
 
Channel 1
Source name Isolated tumor DNA, derived from cerebellar medulloblastoma.
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Comparison of normal versus tumor DNA (medulloblastoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH). Every experiment was performed as dye-swap.
 
Submission date Jan 28, 2005
Last update date Oct 06, 2005
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL1432
Series (1)
GSE2139 human medulloblastoma

Data table header descriptions
ID_REF
Block In which block a single spot is localized. The block count starts from the left top to the right hand side and ends at the right bottom of the slide.
Column In which column a single spot is localized. The count starts from the left top downwards and ends at the right bottom of a single block (Y-direction).
Row In which row a single spot is localized. The count starts from the left top to the right hand side and ends at the right bottom of a single block (X-direction).
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF Block Column Row VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 4 19 1 0.024 5724 5580 1570 566 585 126 52 340 5509 5249 1598 435 451 102 52 340
G000001-2 4 20 1 -0.023 4950 4973 1850 561 574 119 52 340 4883 4560 1855 422 427 97 52 340
G000001-3 4 21 1 0.121 6059 6045 1962 545 563 130 52 340 5498 5396 1857 429 449 143 52 340
G000002-1 12 19 1 -0.13 17296 17382 3123 529 553 263 52 414 18790 18461 3553 438 451 144 52 414
G000002-2 12 20 1 -0.136 16369 16350 2863 498 541 349 52 420 17855 17197 3278 412 436 180 52 420
G000002-3 12 21 1 -0.034 16279 16186 2662 495 519 155 52 420 16563 16329 3250 407 432 129 52 420
G000003-1 20 19 1 -0.023 11444 11171 2183 567 585 143 52 340 11504 11178 2388 455 455 107 52 340
G000003-2 20 20 1 -0.016 11113 10957 1844 552 562 144 52 340 11114 10866 2055 435 439 106 52 340
G000003-3 20 21 1 0 10099 10137 2662 534 541 114 52 420 9989 9760 2349 424 444 130 52 420
G000004-1 28 19 1 -0.13 13690 13787 2149 517 537 149 52 340 14841 14759 2348 421 436 131 52 340
G000004-2 28 20 1 -0.164 13575 13132 2611 514 533 186 52 420 15039 13981 3103 409 442 181 52 420
G000004-3 28 21 1 -0.144 13479 13680 2386 529 563 194 52 420 14729 14390 2936 423 463 274 52 420
G000005-1 36 19 1 0.244 26679 24999 5545 492 511 140 52 340 22494 21190 4974 389 404 122 52 340
G000005-2 36 20 1 0.133 28280 26606 5905 509 548 211 52 340 25740 23752 6019 422 667 2498 52 340
G000005-3 36 21 1 0.134 27589 25855 7388 522 581 518 52 420 25076 23363 5930 414 435 175 52 420
G000006-1 44 19 1 -0.016 19861 18978 3438 506 562 329 52 420 19975 19079 3492 401 428 191 52 420
G000006-2 44 20 1 -0.032 20409 19963 3859 516 578 265 52 420 20743 20102 3855 402 443 250 52 420
G000006-3 44 21 1 -0.014 21536 20494 5295 484 532 260 52 420 21634 20001 6107 378 400 164 52 420
G000007-1 4 16 1 -0.041 11799 12009 1797 567 576 129 52 340 11995 11953 2079 443 449 131 52 340
G000007-2 4 17 1 -0.058 11949 12185 2696 558 565 126 52 340 12308 12055 2791 451 455 132 52 340

Total number of rows: 19311

Table truncated, full table size 1768 Kbytes.




Supplementary data files not provided

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