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Sample GSM40104 Query DataSets for GSM40104
Status Public on Nov 30, 2005
Title M10 Cy3
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name Isolated tumor DNA, derived from cerebellar medulloblastoma.
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Comparison of normal versus tumor DNA (medulloblastoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH). Every experiment was performed as dye-swap.
 
Submission date Jan 28, 2005
Last update date Oct 06, 2005
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL1432
Series (1)
GSE2139 human medulloblastoma

Data table header descriptions
ID_REF
Block In which block a single spot is localized. The block count starts from the left top to the right hand side and ends at the right bottom of the slide.
Column In which column a single spot is localized. The count starts from the left top downwards and ends at the right bottom of a single block (Y-direction).
Row In which row a single spot is localized. The count starts from the left top to the right hand side and ends at the right bottom of a single block (X-direction).
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF Block Column Row VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 29 1 1 -0.041 4887 4668 780 120 126 48 52 385 5057 4900 846 151 153 42 52 385
G000001-2 29 2 1 -0.028 4787 4331 1446 120 125 47 80 427 4909 4511 1453 149 150 41 80 427
G000001-3 29 3 1 -0.102 4581 4030 1412 115 121 44 80 428 4932 4282 1385 140 143 39 80 428
G000002-1 21 1 1 -0.049 10926 9834 3380 112 118 45 80 450 11344 10103 3261 154 156 41 80 450
G000002-2 21 2 1 -0.038 10382 9123 3125 114 117 46 80 401 10703 9292 3296 158 160 40 80 401
G000002-3 21 3 1 -0.01 10555 8970 3170 116 119 45 80 428 10672 9074 3290 157 160 45 80 428
G000003-1 13 1 1 -0.088 7724 7267 1583 109 111 42 52 320 8246 7760 1455 151 152 40 52 320
G000003-2 13 2 1 -0.015 7820 7449 1436 110 115 43 52 362 7931 7727 1210 141 145 42 52 362
G000003-3 13 3 1 -0.075 7350 7113 1417 114 115 44 52 362 7765 7406 1404 143 152 93 52 362
G000004-1 5 1 1 0.116 8789 8108 2311 111 117 42 80 476 8164 7479 2106 156 156 39 80 476
G000004-2 5 2 1 0.197 9938 9514 1652 111 115 44 52 353 8731 8567 1343 156 165 102 52 353
G000004-3 5 3 1 0.177 10510 10376 941 108 111 41 52 362 9361 9353 1187 158 158 36 52 362
G000005-1 29 4 1 0.069 17378 15004 5209 113 121 46 80 428 16597 14636 4791 144 146 38 80 428
G000005-2 29 5 1 0.042 16715 16096 3933 118 128 69 52 353 16267 15611 3536 145 151 50 52 353
G000005-3 29 6 1 0.054 16767 14082 5375 115 123 57 80 464 16185 13822 5111 146 149 44 80 464
G000006-1 21 4 1 0.015 13169 12578 2125 113 119 43 52 362 13077 12425 2108 153 154 39 52 362
G000006-2 21 5 1 0.051 12498 12205 1734 108 113 42 52 362 12111 11668 1574 152 153 37 52 362
G000006-3 21 6 1 0.034 12257 11999 1878 110 113 41 52 362 12025 11454 2128 158 160 42 52 362
G000007-1 13 4 1 -0.004 8988 8658 1095 110 114 42 52 362 9047 8637 1301 144 150 43 52 362
G000007-2 13 5 1 -0.001 8595 8340 1119 112 116 41 52 362 8633 8307 1061 144 149 38 52 362

Total number of rows: 19311

Table truncated, full table size 1697 Kbytes.




Supplementary data files not provided

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