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Sample GSM40105 Query DataSets for GSM40105
Status Public on Nov 30, 2005
Title M10 Cy5
Sample type genomic
 
Channel 1
Source name Isolated tumor DNA, derived from cerebellar medulloblastoma.
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Comparison of normal versus tumor DNA (medulloblastoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH). Every experiment was performed as dye-swap.
 
Submission date Jan 28, 2005
Last update date Oct 06, 2005
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL1432
Series (1)
GSE2139 human medulloblastoma

Data table header descriptions
ID_REF
Block In which block a single spot is localized. The block count starts from the left top to the right hand side and ends at the right bottom of the slide.
Column In which column a single spot is localized. The count starts from the left top downwards and ends at the right bottom of a single block (Y-direction).
Row In which row a single spot is localized. The count starts from the left top to the right hand side and ends at the right bottom of a single block (X-direction).
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF Block Column Row VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 29 1 1 -0.097 4518 4411 459 109 120 53 52 328 4930 4880 547 214 228 134 52 328
G000001-2 29 2 1 -0.098 5052 4984 439 98 103 39 52 307 5491 5521 535 190 195 50 52 307
G000001-3 29 3 1 -0.102 4959 4708 695 95 101 36 52 320 5408 5133 955 187 192 53 52 320
G000002-1 21 1 1 -0.118 10828 10374 1557 110 114 45 52 394 11821 11118 2289 189 194 65 52 394
G000002-2 21 2 1 -0.028 10991 10208 2173 105 113 48 52 381 11290 10936 2031 191 200 92 52 381
G000002-3 21 3 1 -0.168 10730 10557 1279 103 108 50 52 314 12122 11619 1391 183 189 72 52 314
G000003-1 13 1 1 -0.157 7240 6600 1779 102 108 44 52 320 8136 7288 2411 179 189 114 52 320
G000003-2 13 2 1 -0.119 7156 6976 1293 103 109 41 52 316 7855 7666 1865 193 200 140 52 316
G000003-3 13 3 1 -0.041 7538 7346 632 103 109 43 32 236 7826 7816 884 175 179 59 32 236
G000004-1 5 1 1 -0.217 7994 7848 1018 108 113 42 52 393 9356 9368 1454 188 192 56 52 393
G000004-2 5 2 1 -0.259 8303 8037 1153 99 103 39 52 370 10007 9785 1777 190 193 54 52 370
G000004-3 5 3 1 -0.282 8163 8080 1101 98 103 38 52 322 9987 9538 1898 181 185 49 52 322
G000005-1 29 4 1 -0.181 17965 17746 1821 98 106 40 52 320 20443 20254 1665 188 192 55 52 320
G000005-2 29 5 1 -0.081 16927 16531 1864 101 108 40 52 314 17980 17255 2730 185 189 51 52 314
G000005-3 29 6 1 -0.22 16986 16985 2174 94 100 37 52 322 19851 19526 2572 175 176 56 52 322
G000006-1 21 4 1 -0.164 10717 10341 2057 100 108 49 52 314 12082 11482 2703 183 192 73 52 314
G000006-2 21 5 1 -0.222 11541 10874 2095 104 109 40 52 315 13517 12800 2082 174 178 48 52 315
G000006-3 21 6 1 -0.188 11669 11537 1112 103 110 43 52 309 13349 13361 1353 174 184 77 52 309
G000007-1 13 4 1 -0.181 7571 6848 2364 101 105 40 52 316 8643 7590 2607 173 176 51 52 316
G000007-2 13 5 1 -0.184 8704 8456 969 109 120 102 32 231 9943 9316 1405 182 201 202 32 231

Total number of rows: 19311

Table truncated, full table size 1688 Kbytes.




Supplementary data files not provided

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