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Sample GSM40106 Query DataSets for GSM40106
Status Public on Nov 30, 2005
Title M11 Cy3
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name Isolated tumor DNA, derived from cerebellar medulloblastoma.
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Comparison of normal versus tumor DNA (medulloblastoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH). Every experiment was performed as dye-swap.
 
Submission date Jan 28, 2005
Last update date Oct 06, 2005
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL1432
Series (1)
GSE2139 human medulloblastoma

Data table header descriptions
ID_REF
Block In which block a single spot is localized. The block count starts from the left top to the right hand side and ends at the right bottom of the slide.
Column In which column a single spot is localized. The count starts from the left top downwards and ends at the right bottom of a single block (Y-direction).
Row In which row a single spot is localized. The count starts from the left top to the right hand side and ends at the right bottom of a single block (X-direction).
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF Block Column Row VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 4 19 1 0.041 3599 3760 961 503 527 210 52 340 3229 3323 1080 219 230 83 52 340
G000001-2 4 20 1 0.048 3485 3570 1340 500 581 1098 52 340 3102 3201 1221 214 231 180 52 340
G000001-3 4 21 1 0.156 4945 4555 1315 478 508 290 52 340 4225 3873 1326 215 220 78 52 340
G000002-1 12 19 1 -0.024 15861 16118 2560 494 516 165 52 414 15867 15880 2827 247 256 76 52 414
G000002-2 12 20 1 0.034 15490 15541 2529 495 509 140 52 420 14901 15292 2687 253 259 76 52 420
G000002-3 12 21 1 0.035 16386 15938 2631 499 503 121 52 340 15755 15478 2540 249 259 83 52 340
G000003-1 20 19 1 -0.159 8687 8830 2837 475 495 182 52 340 9405 8772 3293 238 246 71 52 340
G000003-2 20 20 1 -0.033 9904 9599 2556 475 483 117 52 340 9880 9826 2311 232 241 69 52 340
G000003-3 20 21 1 -0.092 9376 9469 3260 475 487 160 52 340 9714 9827 3234 225 233 60 52 340
G000004-1 28 19 1 0.027 11842 12042 1995 390 476 756 52 420 11447 11756 2194 208 227 193 52 420
G000004-2 28 20 1 -0.002 11013 11026 2478 412 489 756 52 420 10822 10817 2250 204 239 284 52 420
G000004-3 28 21 1 0.107 12381 12399 2287 408 422 178 52 420 11323 11734 2330 208 210 63 52 420
G000005-1 36 19 1 0.084 21502 21949 5622 399 433 217 52 340 20122 20780 5392 206 221 107 52 340
G000005-2 36 20 1 0.118 22870 22320 4941 406 432 176 52 340 20902 20211 5412 204 238 330 52 340
G000005-3 36 21 1 0.038 21614 24063 6852 381 403 167 52 340 20867 22733 6154 192 216 170 52 340
G000006-1 44 19 1 -0.002 14706 14363 3174 434 455 193 52 420 14537 14472 2597 246 253 81 52 420
G000006-2 44 20 1 -0.022 14572 14306 3198 424 438 128 52 420 14604 14076 3781 238 246 74 52 420
G000006-3 44 21 1 0.021 15293 15763 2693 412 451 365 52 420 14897 15395 2725 233 248 98 52 420
G000007-1 4 16 1 0.062 9009 9108 1669 492 551 563 52 420 8377 8631 1798 220 235 129 52 420
G000007-2 4 17 1 -0.005 10310 10024 2220 481 510 160 52 340 10085 9637 1924 220 223 62 52 340

Total number of rows: 19311

Table truncated, full table size 1742 Kbytes.




Supplementary data files not provided

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