NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM401388 Query DataSets for GSM401388
Status Public on Dec 31, 2009
Title Control_methoserial_1
Sample type RNA
 
Source name Scraped pleural mesothelial cells of 8 week male rat untreated
Organism Rattus norvegicus
Characteristics strain: Fischer 344
sample: control
tissue: Scraped pleural mesothelial cells
Extracted molecule total RNA
Extraction protocol RNA was extracted using RNeasy Mini(QIAGEN).
Label Cy3
Label protocol According to the manufacturer’s protocol (One-Color Microarray-Based Gene Expression Analysis (Quick Amp Labeling), Version 5.7, March 2008).
 
Hybridization protocol According to the manufacturer’s protocol (One-Color Microarray-Based Gene Expression Analysis (Quick Amp Labeling), Version 5.7, March 2008).
Scan protocol According to the manufacturer’s protocol (One-Color Microarray-Based Gene Expression Analysis (Quick Amp Labeling), Version 5.7, March 2008, Agilent Scanner Settings).
Description Original sample number: mes_1
Data processing Microarray data were analyzed following import into GeneSpring GX 10.0.2 software (Agilent Technologies)
Threshold: 1.0
Logbase: 2
Technology: Agilent.SingleColor.14879
Normalization: Shift to 75 percentile
Baseline Transformation: Median of Control Samples
 
Submission date May 11, 2009
Last update date May 21, 2009
Contact name Shinya Toyokuni
E-mail(s) akatsuka@med.nagoya-u.ac.jp
Organization name Nagoya University
Department Pathology
Street address 65 Tsuruma-Cho, Showa-Ku
City Nagoya
State/province Aichi
ZIP/Postal code 466-8550
Country Japan
 
Platform ID GPL7294
Series (1)
GSE16138 Transcriptome analysis of mesothelioma induced by intraperitoneal injections of ferric saccharate in rats

Data table header descriptions
ID_REF
VALUE GeneSpring GX 10.0.2 normalized signal intensity

Data table
ID_REF VALUE
A_44_P465448 -0.73431087
A_44_P514796 0.40469456
A_44_P409518 0.92908216
A_44_P279262 1.3842351
A_44_P375042 -0.26395297
A_44_P269499 0.01557827
A_44_P204808 0.90726376
A_44_P438090 -0.17034578
A_44_P330643 -0.26683235
A_44_P421941 -0.6626797
A_42_P504653 0.10126662
A_44_P260580 -0.6721091
A_44_P445440 0.18403053
A_44_P313825 -0.099309206
A_44_P788423 -0.19543076
A_44_P549509 -0.17983437
A_43_P12354 -0.46159554
A_43_P14989 -0.8285396
A_44_P172767 -1.1886544
A_44_P884555 -0.5112078

Total number of rows: 41088

Table truncated, full table size 962 Kbytes.




Supplementary file Size Download File type/resource
GSM401388.txt.gz 7.7 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap