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Sample GSM402904 Query DataSets for GSM402904
Status Public on Dec 31, 2009
Title Epithelioid_3
Sample type RNA
 
Source name F1 from Fischer344 and Brown-Norway, male, ferric saccharate induced mesothlioma of epithelioid types
Organism Rattus norvegicus
Characteristics strain: F1 from Fischer344 and Brown-Norway
gender: male
tissue: mesothlioma of epithelioid types
sample: tumor
Treatment protocol ferric saccharate induced
Extracted molecule total RNA
Extraction protocol RNA was extracted using RNeasy Mini(QIAGEN).
Label Cy3
Label protocol According to the manufacturer’s protocol (One-Color Microarray-Based Gene Expression Analysis (Quick Amp Labeling), Version 5.7, March 2008).
 
Hybridization protocol According to the manufacturer’s protocol (One-Color Microarray-Based Gene Expression Analysis (Quick Amp Labeling), Version 5.7, March 2008).
Scan protocol According to the manufacturer’s protocol (One-Color Microarray-Based Gene Expression Analysis (Quick Amp Labeling), Version 5.7, March 2008, Agilent Scanner Settings).
Description Original sample number: FB15-1
Data processing Microarray data were analyzed following import into GeneSpring GX 10.0.2 software (Agilent Technologies)
Threshold: 1.0
Logbase: 2
Technology: Agilent.SingleColor.14879
Normalization: Shift to 75 percentile
Baseline Transformation: Median of Control Samples
 
Submission date May 14, 2009
Last update date May 21, 2009
Contact name Shinya Toyokuni
E-mail(s) akatsuka@med.nagoya-u.ac.jp
Organization name Nagoya University
Department Pathology
Street address 65 Tsuruma-Cho, Showa-Ku
City Nagoya
State/province Aichi
ZIP/Postal code 466-8550
Country Japan
 
Platform ID GPL7294
Series (1)
GSE16138 Transcriptome analysis of mesothelioma induced by intraperitoneal injections of ferric saccharate in rats

Data table header descriptions
ID_REF
VALUE GeneSpring GX 10.0.2 normalized signal intensity

Data table
ID_REF VALUE
A_44_P465448 -0.7260444
A_44_P514796 -0.4181366
A_44_P409518 -0.26170564
A_44_P279262 -1.4190662
A_44_P375042 -0.43422055
A_44_P269499 0.47103977
A_44_P204808 0.58477974
A_44_P438090 0.5222697
A_44_P330643 0.020064354
A_44_P421941 0.26709366
A_42_P504653 -2.1454246
A_44_P260580 0.8368101
A_44_P445440 -0.9861679
A_44_P313825 -0.026420832
A_44_P788423 -0.34996843
A_44_P549509 0.4727764
A_43_P12354 0.40924835
A_43_P14989 0.4004619
A_44_P172767 0.75322056
A_44_P884555 0.7466557

Total number of rows: 41088

Table truncated, full table size 956 Kbytes.




Supplementary file Size Download File type/resource
GSM402904.txt.gz 7.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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