NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM410140 Query DataSets for GSM410140
Status Public on May 27, 2010
Title Control tumor4
Sample type genomic
 
Channel 1
Source name Squamous Cell Carcinoma
Organism Mus musculus
Characteristics tumor type: SCC
tissue: Skin
Extracted molecule genomic DNA
Extraction protocol Genomic DNA extracted using Dneasy Kit following manufacturer's instructions
Label Cy3
Label protocol Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis Protocol Version 5.0 was followed to label 1 µg of experimental or reference DNA
 
Channel 2
Source name C57BL/6 reference genomic DNA
Organism Mus musculus
Characteristics strain: C57BL/6
Biomaterial provider Jackson Laboratory
Extracted molecule genomic DNA
Extraction protocol Genomic DNA extracted using Dneasy Kit following manufacturer's instructions
Label Cy5
Label protocol Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis Protocol Version 5.0 was followed to label 1 µg of experimental or reference DNA
 
 
Hybridization protocol labelled samples were prepared for hybridization using the Agilent aCGH Hybridization Kit and hybridized to arrays using Agilent Hybridization Oven (G2545A).
Scan protocol Washed and dryed slides were scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 9.5.3.1).
Description Control group
Data processing The Agilent Feature Extraction Software (v 9.5.31) was used for background subtraction and LOWESS normalization.
 
Submission date May 29, 2009
Last update date May 29, 2009
Contact name Enrique Torchia
E-mail(s) enrique.torchia@ucdenver.edu
Organization name University of Denver
Department Dermatology
Street address 12800 E 19th Ave, Rm P18-8123
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platform ID GPL4092
Series (1)
GSE16342 CGH Analysis of Murine Squamous Cell Carcinoma: Control vs. Tumors overexpressing Aurora Kinase A

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 -1.225773028e-001
2 0.000000000e+000
3 0.000000000e+000
4 -3.079207135e-001
5 -2.967641887e-001
6 1.801885470e-001
7 4.182393777e-002
8 1.768475472e-001
9 1.853579258e-001
10 9.588055207e-002
11 -4.178200015e-002
12 9.098936927e-002
13 8.346423376e-003
14 -1.570138286e-002
15 3.535589214e-001
16 -1.811461296e-002
17 3.002203053e-002
18 -4.185211322e-002
19 -2.150537547e-002
20 1.374717051e-001

Total number of rows: 243301

Table truncated, full table size 5708 Kbytes.




Supplementary file Size Download File type/resource
GSM410140.txt.gz 74.6 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap