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Sample GSM410151 Query DataSets for GSM410151
Status Public on May 27, 2010
Title Aurora-A tumor3
Sample type genomic
 
Channel 1
Source name Squamous Cell Carcinoma
Organism Mus musculus
Characteristics tumor type: SCC
tissue: Skin
Extracted molecule genomic DNA
Extraction protocol Genomic DNA extracted using Dneasy Kit following manufacturer's instructions
Label Cy3
Label protocol Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis Protocol Version 5.0 was followed to label 1 µg of experimental or reference DNA
 
Channel 2
Source name C57BL/6 reference genomic DNA
Organism Mus musculus
Characteristics strain: C57BL/6
Biomaterial provider Jackson Laboratory
Extracted molecule genomic DNA
Extraction protocol Genomic DNA extracted using Dneasy Kit following manufacturer's instructions
Label Cy5
Label protocol Agilent Oligonucleotide Array-Based CGH for Genomic DNA Analysis Protocol Version 5.0 was followed to label 1 µg of experimental or reference DNA
 
 
Hybridization protocol labelled samples were prepared for hybridization using the Agilent aCGH Hybridization Kit and hybridized to arrays using Agilent Hybridization Oven (G2545A).
Scan protocol Washed and dryed slides were scanned on an Agilent G2565BA scanner.
Images were quantified using Agilent Feature Extraction Software (version 9.5.3.1).
Description Experimental group
Data processing The Agilent Feature Extraction Software (v 9.5.31) was used for background subtraction and LOWESS normalization.
 
Submission date May 29, 2009
Last update date May 29, 2009
Contact name Enrique Torchia
E-mail(s) enrique.torchia@ucdenver.edu
Organization name University of Denver
Department Dermatology
Street address 12800 E 19th Ave, Rm P18-8123
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Platform ID GPL4092
Series (1)
GSE16342 CGH Analysis of Murine Squamous Cell Carcinoma: Control vs. Tumors overexpressing Aurora Kinase A

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 -8.788292529e-002
2 0.000000000e+000
3 -2.686514386e-001
4 -4.282179244e-001
5 -2.988285493e-001
6 2.790190639e-001
7 -2.861103878e-002
8 1.564846941e-001
9 1.210775008e-001
10 3.161502285e-002
11 -5.559152273e-002
12 -1.205536624e-001
13 -6.926672013e-002
14 -4.434529265e-002
15 7.480320094e-002
16 -2.394290405e-001
17 -3.171629508e-001
18 -9.491876354e-002
19 -1.120054402e-001
20 2.456290661e-002

Total number of rows: 243301

Table truncated, full table size 5709 Kbytes.




Supplementary file Size Download File type/resource
GSM410151.txt.gz 74.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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