NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM420358 Query DataSets for GSM420358
Status Public on Aug 20, 2009
Title CD4-HDACi-12h_2
Sample type RNA
 
Source name Human CD4+ T cell with HDAC inhibitor treatment after 12 hours
Organism Homo sapiens
Characteristics cell type: CD4+ T cell
agent: HDAC inhibitor treatment after 12 hours
Extracted molecule total RNA
Extraction protocol as described in Wang et al., 2009
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Gene expression
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
 
Submission date Jun 24, 2009
Last update date Aug 12, 2009
Contact name Chongzhi Zang
Organization name University of Virginia
Street address P. O. Box 800717
City Charlottesville
State/province VA
ZIP/Postal code 22908
Country USA
 
Platform ID GPL570
Series (1)
GSE15735 Genome-wide mapping of HATs and HDACs in human CD4+ T cells

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1498.1 P 6.02111e-05
AFFX-BioB-M_at 1988.8 P 4.42873e-05
AFFX-BioB-3_at 1251.44 P 4.42873e-05
AFFX-BioC-5_at 4083.87 P 5.16732e-05
AFFX-BioC-3_at 5022 P 4.42873e-05
AFFX-BioDn-5_at 10991.2 P 4.42873e-05
AFFX-BioDn-3_at 15692.4 P 4.42873e-05
AFFX-CreX-5_at 64669.3 P 5.16732e-05
AFFX-CreX-3_at 62913.7 P 4.42873e-05
AFFX-DapX-5_at 3086.88 P 4.42873e-05
AFFX-DapX-M_at 5605.91 P 0.000340305
AFFX-DapX-3_at 5930.9 P 4.42873e-05
AFFX-LysX-5_at 277.55 P 4.42873e-05
AFFX-LysX-M_at 287.94 P 0.000445901
AFFX-LysX-3_at 564.755 P 4.42873e-05
AFFX-PheX-5_at 430.487 P 6.02111e-05
AFFX-PheX-M_at 457.326 P 9.4506e-05
AFFX-PheX-3_at 406.736 P 5.16732e-05
AFFX-ThrX-5_at 787.489 P 5.16732e-05
AFFX-ThrX-M_at 1268.43 P 4.42873e-05

Total number of rows: 54675

Table truncated, full table size 1637 Kbytes.




Supplementary file Size Download File type/resource
GSM420358.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM420358.CHP.gz 302.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap