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GEO accession:
Sample GSM420358
Query DataSets for GSM420358
Status
Public on Aug 20, 2009
Title
CD4-HDACi-12h_2
Sample type
RNA
Source name
Human CD4+ T cell with HDAC inhibitor treatment after 12 hours
Organism
Homo sapiens
Characteristics
cell type: CD4+ T cell
agent: HDAC inhibitor treatment after 12 hours
Extracted molecule
total RNA
Extraction protocol
as described in Wang et al., 2009
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Description
Gene expression
Data processing
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
Submission date
Jun 24, 2009
Last update date
Aug 12, 2009
Contact name
Chongzhi Zang
Organization name
University of Virginia
Street address
P. O. Box 800717
City
Charlottesville
State/province
VA
ZIP/Postal code
22908
Country
USA
Platform ID
GPL570
Series (1)
GSE15735
Genome-wide mapping of HATs and HDACs in human CD4+ T cells
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1498.1
P
6.02111e-05
AFFX-BioB-M_at
1988.8
P
4.42873e-05
AFFX-BioB-3_at
1251.44
P
4.42873e-05
AFFX-BioC-5_at
4083.87
P
5.16732e-05
AFFX-BioC-3_at
5022
P
4.42873e-05
AFFX-BioDn-5_at
10991.2
P
4.42873e-05
AFFX-BioDn-3_at
15692.4
P
4.42873e-05
AFFX-CreX-5_at
64669.3
P
5.16732e-05
AFFX-CreX-3_at
62913.7
P
4.42873e-05
AFFX-DapX-5_at
3086.88
P
4.42873e-05
AFFX-DapX-M_at
5605.91
P
0.000340305
AFFX-DapX-3_at
5930.9
P
4.42873e-05
AFFX-LysX-5_at
277.55
P
4.42873e-05
AFFX-LysX-M_at
287.94
P
0.000445901
AFFX-LysX-3_at
564.755
P
4.42873e-05
AFFX-PheX-5_at
430.487
P
6.02111e-05
AFFX-PheX-M_at
457.326
P
9.4506e-05
AFFX-PheX-3_at
406.736
P
5.16732e-05
AFFX-ThrX-5_at
787.489
P
5.16732e-05
AFFX-ThrX-M_at
1268.43
P
4.42873e-05
Total number of rows:
54675
Table truncated, full table size
1637 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM420358.CEL.gz
4.5 Mb
(ftp)
(http)
CEL
GSM420358.CHP.gz
302.0 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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