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Sample GSM4277338 Query DataSets for GSM4277338
Status Public on Jan 10, 2021
Title wt3
Sample type SRA
 
Source name murine ESC
Organism Mus musculus
Characteristics genotype/variation: wildtype
Treatment protocol 6 days of ethanol (vehicle) or tamoxifen (4OHT)
Growth protocol 200K cells were plated in 6 well plates
Extracted molecule polyA RNA
Extraction protocol RNA was extracted using Trizol, processed through the Qiagen RNAeasy Mini Plus Kit
RNA-seq libraries were made using the NEBNext Ultra RNA Library Prep Kit for Illumina
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description DEXSeq_exon_counts.csv
Data processing Reads were aligned using STAR to mm9
Aligned reads were analyzed using DEXeq
Genome_build: mm9
 
Submission date Jan 20, 2020
Last update date Jan 10, 2021
Contact name Sridhar Rao
E-mail(s) sridhar.rao@bcw.edu
Phone 4149373841
Organization name BloodCenter of Wisconsin
Department Blood Research Institute
Street address 8727 Watertown Plank Road
City Milwaukee
State/province WI
ZIP/Postal code 53226
Country USA
 
Platform ID GPL19057
Series (1)
GSE143960 Two super-enhancers regulate Nanog expression through distinct mechanisms [45del]
Relations
BioSample SAMN13892716
SRA SRX7584358

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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