|
Status |
Public on Jul 15, 2009 |
Title |
Kc167_42.3 |
Sample type |
SRA |
|
|
Source name |
Kc167 cell line
|
Organism |
Drosophila melanogaster |
Characteristics |
cell line: Kc167 replicate: technical
|
Treatment protocol |
none
|
Growth protocol |
Schneider's medium + 10% heat-inactivated FCS
|
Extracted molecule |
polyA RNA |
Extraction protocol |
TRIzol Dnase Rneasy
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina Genome Analyzer |
|
|
Description |
Oligo-dT selected, double stranded cDNA single read sequencing processed data file: 42_3.gff processed data file: Kc167.wig (linked as a supplementary file to the Series GSE17107 record)
|
Data processing |
Reads were aligned to the reference genome (Drosophila melanogaster, BDGP Release 5) and a splice junction database to identify uniquely mapping reads and the data converted to GFF files and .wiggle files which indicate the number of reads that map to each base in the genome.
|
|
|
Submission date |
Jul 15, 2009 |
Last update date |
May 15, 2019 |
Contact name |
Marijke Jeltje van Baren |
E-mail(s) |
jeltje@wustl.edu
|
Organization name |
Washington University
|
Department |
CSE
|
Lab |
Brent
|
Street address |
One Brookings Drive
|
City |
St Louis |
State/province |
MO |
ZIP/Postal code |
63130 |
Country |
USA |
|
|
Platform ID |
GPL9058 |
Series (1) |
GSE17107 |
modENCODE RNA-Seq of Drosophila cell line Kc167 |
|
Relations |
Reanalyzed by |
GSM3274493 |
SRA |
SRX012153 |
BioSample |
SAMN00004274 |