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Sample GSM427869 Query DataSets for GSM427869
Status Public on Jul 15, 2009
Title Kc167_42.3
Sample type SRA
Source name Kc167 cell line
Organism Drosophila melanogaster
Characteristics cell line: Kc167
replicate: technical
Treatment protocol none
Growth protocol Schneider's medium + 10% heat-inactivated FCS
Extracted molecule polyA RNA
Extraction protocol TRIzol Dnase Rneasy
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
Description Oligo-dT selected, double stranded cDNA single read sequencing
processed data file: 42_3.gff
processed data file: Kc167.wig (linked as a supplementary file to the Series GSE17107 record)
Data processing Reads were aligned to the reference genome (Drosophila melanogaster, BDGP Release 5) and a splice junction database to identify uniquely mapping reads and the data converted to GFF files and .wiggle files which indicate the number of reads that map to each base in the genome.
Submission date Jul 15, 2009
Last update date May 15, 2019
Contact name Marijke Jeltje van Baren
Organization name Washington University
Department CSE
Lab Brent
Street address One Brookings Drive
City St Louis
State/province MO
ZIP/Postal code 63130
Country USA
Platform ID GPL9058
Series (1)
GSE17107 modENCODE RNA-Seq of Drosophila cell line Kc167
Reanalyzed by GSM3274493
SRA SRX012153
BioSample SAMN00004274

Supplementary file Size Download File type/resource
GSM427869_42_3.gff.gz 79.8 Mb (ftp)(http) GFF
SRA Run SelectorHelp
Processed data provided as supplementary file
Processed data are available on Series record
Raw data are available in SRA

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