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Sample GSM434146 Query DataSets for GSM434146
Status Public on Nov 04, 2009
Title Wild type cortex 3
Sample type RNA
 
Source name mouse wild type cortex
Organism Mus musculus
Characteristics strain: CD1
tissue: P10 cortex
Extracted molecule total RNA
Extraction protocol Trizol Extraction
Label TdT (Affymetrix WT Sense Target Labeling Assay)
Label protocol Affymetrix WT Sense Target Labeling Assay
 
Hybridization protocol Affymetrix WT Sense Target Labeling Assay
Scan protocol Affymetrix GeneChip Operating Software (GCOS) v1.4; GeneChip Scanner 3000 7G.
Description mouse wild type cortex
Data processing The average probe values used by ASPIRE version 2 were (RMA signal estimates from Expression Console 1.1). All exon (PSR) and junction (JUC) probe values were analysed by the second and third step of ASPIRE version 2. The median value of background probes with the same GC content was subtracted from each probe value. Probe values with high variability and weak signal were removed from analysis before calculating the median value of all probes within a probeset.
 
Submission date Jul 28, 2009
Last update date Nov 03, 2009
Contact name Donny D Licatalosi
Organization name Case Western Reserve University
Lab Licatalosi
Street address 10900 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Platform ID GPL8940
Series (2)
GSE12965 Wild type vs. Nova2 KO mouse P10 cortex RNA
GSE17376 Wild type vs. Nova2 KO mouse: Exon junction array data

Data table header descriptions
ID_REF
VALUE Probeset signal values from ASPIRE2 (see supplemental methods, Licatalosi et al., Nature 456, 464-469, 2008).

Data table
ID_REF VALUE
JUC0100000003 402.00
JUC0100000010 2328.85
JUC0100000025 1407.00
JUC0100000033 462.50
JUC0100000037
JUC0100000051 1151.00
JUC0100000054 663.00
JUC0100000055 79.00
JUC0100000057 115.00
JUC0100000058 312.50
JUC0100000068 527.00
PSR010000006 393.50
PSR010000007 217.00
PSR010000008 38.60
PSR010000009 296.50
PSR010000011 89.50
PSR010000013 562.00
PSR010000016 304.60
JUC0100000070 1373.55
JUC0100000074 561.25

Total number of rows: 314489

Table truncated, full table size 6162 Kbytes.




Supplementary file Size Download File type/resource
GSM434146.CEL.gz 41.6 Mb (ftp)(http) CEL
Processed data included within Sample table
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