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Sample GSM440093 Query DataSets for GSM440093
Status Public on Aug 31, 2009
Title INPUT ZT19, replica 2
Sample type RNA
 
Source name fly head
Organism Drosophila melanogaster
Characteristics time point: ZT19
replicate: 2
tissue: head
developmental stage: adult
Growth protocol Flies were grown under standard conditions in 12hs light and 12hs dark cycles
Extracted molecule total RNA
Extraction protocol Heads were collected and RNA extracted using TRIZOL
Label biotin
Label protocol RNA was utilized to prepare cDNA and cRNA using the Affymetrix IVT labeling Kit
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 18 hrs at 45C on GeneChip Drosophila Genome 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned with the Affymetrix GeneArray Scanner G7
Description INP sample, ZT19
Data processing The data were processed with GCRMA algorithm in the Bioconductor with default settings
 
Submission date Aug 13, 2009
Last update date Aug 28, 2018
Contact name Ken Sugino
Organization name Janelia Research Campus
Lab NeuroSeq
Street address 19700 Helix Dr
City Ashburn
State/province VA
ZIP/Postal code 20147
Country USA
 
Platform ID GPL1322
Series (2)
GSE17627 AGO 1 IMMUNOPRECIPITATION MICROARRAYS
GSE17629 Circadian analysis of miRNAs and their targets
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE GCRMA summary value

Data table
ID_REF VALUE
1616608_a_at 11.9566
1622892_s_at 8.74363
1622893_at 13.5117
1622894_at 7.10278
1622895_at 6.5143
1622896_at 8.30433
1622897_at 4.91124
1622898_a_at 8.51959
1622899_at 4.25626
1622900_at 3.6356
1622901_at 4.39875
1622902_at 5.7865
1622903_s_at 8.08694
1622904_at 4.38916
1622905_at 3.52284
1622906_at 6.61665
1622907_at 8.88745
1622908_a_at 5.86807
1622909_at 8.35877
1622910_at 4.00585

Total number of rows: 18952

Table truncated, full table size 358 Kbytes.




Supplementary file Size Download File type/resource
GSM440093.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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