GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM440096 Query DataSets for GSM440096
Status Public on Aug 31, 2009
Title IP ZT3, replica 1
Sample type RNA
Source name fly head
Organism Drosophila melanogaster
Characteristics time point: ZT3
replicate: 1
tissue: head
developmental stage: adult
Growth protocol Flies were grown under standard conditions in 12hs light and 12hs dark cycles
Extracted molecule total RNA
Extraction protocol Heads were collected and RNA extracted using TRIZOL
Label biotin
Label protocol RNA was utilized to prepare cDNA and cRNA using the Affymetrix IVT labeling Kit
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 18 hrs at 45C on GeneChip Drosophila Genome 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned with the Affymetrix GeneArray Scanner G7
Description IP sample, ZT2
Data processing The data were processed with GCRMA algorithm in the Bioconductor with default settings
Submission date Aug 13, 2009
Last update date Aug 28, 2018
Contact name Ken Sugino
Organization name Janelia Research Campus
Lab NeuroSeq
Street address 19700 Helix Dr
City Ashburn
State/province VA
ZIP/Postal code 20147
Country USA
Platform ID GPL1322
Series (2)
GSE17629 Circadian analysis of miRNAs and their targets
Reanalyzed by GSE119084

Data table header descriptions
VALUE GCRMA summary value

Data table
1616608_a_at 10.4795
1622892_s_at 6.85992
1622893_at 12.9455
1622894_at 5.42879
1622895_at 5.09218
1622896_at 7.39859
1622897_at 3.7876
1622898_a_at 6.92303
1622899_at 3.20668
1622900_at 2.25074
1622901_at 2.78205
1622902_at 3.42564
1622903_s_at 6.69889
1622904_at 2.81462
1622905_at 2.51493
1622906_at 6.32394
1622907_at 6.86177
1622908_a_at 6.14307
1622909_at 7.87767
1622910_at 2.94689

Total number of rows: 18952

Table truncated, full table size 358 Kbytes.

Supplementary file Size Download File type/resource
GSM440096.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap