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Sample GSM440107 Query DataSets for GSM440107
Status Public on Aug 31, 2009
Title IP ZT23, replica 2
Sample type RNA
 
Source name fly head
Organism Drosophila melanogaster
Characteristics time point: ZT23
replicate: 2
tissue: head
developmental stage: adult
Growth protocol Flies were grown under standard conditions in 12hs light and 12hs dark cycles
Extracted molecule total RNA
Extraction protocol Heads were collected and RNA extracted using TRIZOL
Label biotin
Label protocol RNA was utilized to prepare cDNA and cRNA using the Affymetrix IVT labeling Kit
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 18 hrs at 45C on GeneChip Drosophila Genome 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned with the Affymetrix GeneArray Scanner G7
Description IP sample, ZT23
Data processing The data were processed with GCRMA algorithm in the Bioconductor with default settings
 
Submission date Aug 13, 2009
Last update date Aug 28, 2018
Contact name Ken Sugino
Organization name Janelia Research Campus
Lab NeuroSeq
Street address 19700 Helix Dr
City Ashburn
State/province VA
ZIP/Postal code 20147
Country USA
 
Platform ID GPL1322
Series (2)
GSE17627 AGO 1 IMMUNOPRECIPITATION MICROARRAYS
GSE17629 Circadian analysis of miRNAs and their targets
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE GCRMA summary value

Data table
ID_REF VALUE
1616608_a_at 10.3146
1622892_s_at 7.01961
1622893_at 12.8234
1622894_at 5.63313
1622895_at 5.3264
1622896_at 7.40235
1622897_at 3.9386
1622898_a_at 7.00848
1622899_at 3.00594
1622900_at 2.28923
1622901_at 2.99754
1622902_at 4.35229
1622903_s_at 6.66113
1622904_at 2.85748
1622905_at 2.56227
1622906_at 5.98375
1622907_at 7.56824
1622908_a_at 5.80531
1622909_at 7.4588
1622910_at 2.93679

Total number of rows: 18952

Table truncated, full table size 358 Kbytes.




Supplementary file Size Download File type/resource
GSM440107.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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