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Sample GSM440109 Query DataSets for GSM440109
Status Public on Aug 31, 2009
Title INP Tim-Dcr ZT15
Sample type RNA
 
Source name fly head
Organism Drosophila melanogaster
Characteristics tissue: head
developmental stage: adult
Growth protocol Flies were grown under standard conditions in 12hs light and 12hs dark cycles
Extracted molecule total RNA
Extraction protocol Heads were collected and RNA extracted using TRIZOL
Label biotin
Label protocol RNA was utilized to prepare cDNA and cRNA using the Affymetrix IVT labeling Kit
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 18 hrs at 45C on GeneChip Drosophila Genome 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned with the Affymetrix GeneArray Scanner G7
Description INP sample from Tim-Dcr flies, ZT15
Data processing The data were processed with GCRMA algorithm in the Bioconductor with default settings
 
Submission date Aug 13, 2009
Last update date Aug 28, 2018
Contact name Ken Sugino
Organization name Janelia Research Campus
Lab NeuroSeq
Street address 19700 Helix Dr
City Ashburn
State/province VA
ZIP/Postal code 20147
Country USA
 
Platform ID GPL1322
Series (2)
GSE17627 AGO 1 IMMUNOPRECIPITATION MICROARRAYS
GSE17629 Circadian analysis of miRNAs and their targets
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
VALUE GCRMA summary value

Data table
ID_REF VALUE
1616608_a_at 12.3602
1622892_s_at 7.94521
1622893_at 13.4752
1622894_at 7.36601
1622895_at 6.75537
1622896_at 8.86833
1622897_at 5.47606
1622898_a_at 8.54596
1622899_at 4.78696
1622900_at 3.62944
1622901_at 4.34425
1622902_at 6.23684
1622903_s_at 9.05383
1622904_at 4.74963
1622905_at 4.08218
1622906_at 7.36482
1622907_at 9.36566
1622908_a_at 7.54839
1622909_at 8.80706
1622910_at 4.22232

Total number of rows: 18952

Table truncated, full table size 358 Kbytes.




Supplementary file Size Download File type/resource
GSM440109.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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