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Sample GSM440111 Query DataSets for GSM440111
Status Public on Aug 31, 2009
Title IP Tim-Dcr ZT15
Sample type RNA
Source name fly head
Organism Drosophila melanogaster
Characteristics time point: Tim-Dcr ZT15
tissue: head
developmental stage: adult
Growth protocol Flies were grown under standard conditions in 12hs light and 12hs dark cycles
Extracted molecule total RNA
Extraction protocol Heads were collected and RNA extracted using TRIZOL
Label biotin
Label protocol RNA was utilized to prepare cDNA and cRNA using the Affymetrix IVT labeling Kit
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 18 hrs at 45C on GeneChip Drosophila Genome 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned with the Affymetrix GeneArray Scanner G7
Description IP sample from Tim-Dcr flies, ZT15
Data processing The data were processed with GCRMA algorithm in the Bioconductor with default settings
Submission date Aug 13, 2009
Last update date Aug 28, 2018
Contact name Ken Sugino
Organization name Janelia Research Campus
Lab NeuroSeq
Street address 19700 Helix Dr
City Ashburn
State/province VA
ZIP/Postal code 20147
Country USA
Platform ID GPL1322
Series (2)
GSE17629 Circadian analysis of miRNAs and their targets
Reanalyzed by GSE119084

Data table header descriptions
VALUE GCRMA summary value

Data table
1616608_a_at 10.3555
1622892_s_at 5.91858
1622893_at 12.8228
1622894_at 6.03313
1622895_at 5.22958
1622896_at 7.16675
1622897_at 4.43463
1622898_a_at 6.95551
1622899_at 3.45684
1622900_at 2.38958
1622901_at 3.2662
1622902_at 5.4379
1622903_s_at 7.03382
1622904_at 3.44627
1622905_at 3.33048
1622906_at 6.63982
1622907_at 7.58957
1622908_a_at 6.27956
1622909_at 7.77859
1622910_at 2.83557

Total number of rows: 18952

Table truncated, full table size 358 Kbytes.

Supplementary file Size Download File type/resource
GSM440111.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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