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Sample GSM440153 Query DataSets for GSM440153
Status Public on Oct 16, 2009
Title WT W3031A replicate 2 after 2hr at 34 C
Sample type RNA
 
Source name Ess1 WT 34 C rep2
Organism Saccharomyces cerevisiae
Characteristics genotype/variation: WT W3031-A
Extracted molecule total RNA
Extraction protocol Total RNA is isolated using Epicenter RNA purification kit and further cleaned and concentrated using Qiagen RNAeasy columns
Label biotin
Label protocol According to standard Affymetrix protocol.
 
Hybridization protocol According to standard Affymetrix protocol.
Scan protocol According to standard Affymetrix protocol.
Description no additional information
Data processing The Normalization alogrithm for the microarray data is MAS5.0.
 
Submission date Aug 13, 2009
Last update date Sep 24, 2009
Contact name Steven D Hanes
E-mail(s) hanes@wadsworth.org
Phone 518-473-4213
Organization name Wadsworth Center
Department Developmental Genetics
Lab CMS5102
Street address 150 New Scotland Ave
City Albany
State/province NY
ZIP/Postal code 12208
Country USA
 
Platform ID GPL90
Series (1)
GSE17638 The Ess1 prolyl isomerase is required for the transcription termination of small non-coding RNAs via Nrd1 pathway

Data table header descriptions
ID_REF
VALUE value
ABS_CALL Absent call
DETECTION P-VALUE P-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 6.81849 A 0.996788
AFFX-MurIL10_at 8.56685 A 0.794268
AFFX-MurIL4_at 30.5953 A 0.195266
AFFX-MurFAS_at 9.29241 A 0.868639
AFFX-BioB-5_at 267.914 P 0.000972149
AFFX-BioB-M_at 480.075 P 9.4506e-05
AFFX-BioB-3_at 407.96 P 0.000509415
AFFX-BioC-5_at 856.215 P 8.14279e-05
AFFX-BioC-3_at 1006.76 P 5.16732e-05
AFFX-BioDn-5_at 1568.29 P 4.42873e-05
AFFX-BioDn-3_at 4783.38 P 4.42873e-05
AFFX-CreX-5_at 9737.45 P 4.42873e-05
AFFX-CreX-3_at 10701.2 P 5.16732e-05
AFFX-BioB-5_st 6.86604 A 0.804734
AFFX-BioB-M_st 14.2214 A 0.712257
AFFX-BioB-3_st 13.156 A 0.749204
AFFX-BioC-5_st 6.83526 A 0.916408
AFFX-BioC-3_st 2.42154 A 0.9273
AFFX-BioDn-5_st 17.8862 A 0.712257
AFFX-BioDn-3_st 16.2184 A 0.300606

Total number of rows: 9335

Table truncated, full table size 268 Kbytes.




Supplementary file Size Download File type/resource
GSM440153.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM440153.CHP.gz 2.9 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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