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Status |
Public on Mar 13, 2020 |
Title |
10007563-1 |
Sample type |
SRA |
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Source name |
Tissue Biopsy
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Organism |
Homo sapiens |
Characteristics |
age: 25 bmi: 23.28 gender: F cohort: Healthy
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Treatment protocol |
NA
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Growth protocol |
NA
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Extracted molecule |
total RNA |
Extraction protocol |
Biopsy samples were thawed on ice, homogenized, and centrifuged at 13,000 RPM, and the supernatant was transferred to a new tube. RNA was prepared using the RNeasy Mini Kit (QIAGEN, Hilden, Germany).
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
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Data processing |
Base calling was performed with the Illumina CASAVA 1.9 pipeline QC was performed on the FASTQ files using fastQC Alignment and gene counts were obtained through MAPR-Seq pipeline v2.0. Genome_build: hg19 Supplementary_files_format_and_content: GeneCount_raw.txt
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Submission date |
Mar 12, 2020 |
Last update date |
Oct 28, 2020 |
Contact name |
Xiaojia Tang |
E-mail(s) |
Tang.Xiaojia@mayo.edu
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Organization name |
Mayo Clinic
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Street address |
200 1st ST SW
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City |
Rochester |
State/province |
MN |
ZIP/Postal code |
55905 |
Country |
USA |
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Platform ID |
GPL16791 |
Series (1) |
GSE146853 |
Longitudinal multi-omics reveals subset-specific mechanisms underlying irritable bowel syndrome |
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Relations |
BioSample |
SAMN14364271 |
SRA |
SRX7899642 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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