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Sample GSM4407893 Query DataSets for GSM4407893
Status Public on Mar 13, 2020
Title 10007563-1
Sample type SRA
 
Source name Tissue Biopsy
Organism Homo sapiens
Characteristics age: 25
bmi: 23.28
gender: F
cohort: Healthy
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Biopsy samples were thawed on ice, homogenized, and centrifuged at 13,000 RPM, and the supernatant was transferred to a new tube.
RNA was prepared using the RNeasy Mini Kit (QIAGEN, Hilden, Germany).
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Data processing Base calling was performed with the Illumina CASAVA 1.9 pipeline
QC was performed on the FASTQ files using fastQC
Alignment and gene counts were obtained through MAPR-Seq pipeline v2.0.
Genome_build: hg19
Supplementary_files_format_and_content: GeneCount_raw.txt
 
Submission date Mar 12, 2020
Last update date Oct 28, 2020
Contact name Xiaojia Tang
E-mail(s) Tang.Xiaojia@mayo.edu
Organization name Mayo Clinic
Street address 200 1st ST SW
City Rochester
State/province MN
ZIP/Postal code 55905
Country USA
 
Platform ID GPL16791
Series (1)
GSE146853 Longitudinal multi-omics reveals subset-specific mechanisms underlying irritable bowel syndrome
Relations
BioSample SAMN14364271
SRA SRX7899642

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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