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Sample GSM442200 Query DataSets for GSM442200
Status Public on Jun 17, 2010
Title enteropathy associated T cell lymphoma
Sample type genomic
 
Channel 1
Source name T cell lymphoma CV406-2705
Organism Homo sapiens
Characteristics disease stage: T cell lymphoma
Extracted molecule genomic DNA
Extraction protocol DNA from a cell pelet of the T cell lymphoma (>10exp6) was isolated by using the Wizard Genomic DNA Purification Kit (Promega, A1120)
Label cy3
Label protocol DNA labeling protocol according to Enzo Life Sciences
 
Channel 2
Source name female reference DNA
Organism Homo sapiens
Characteristics disease stage: reference
Extracted molecule genomic DNA
Extraction protocol DNA isolation protocol available via www.vumc.nl/microarrays. Also described in Buffart et al, J Pathol. 2007 Jan;211(1):45-51
Label cy5
Label protocol DNA labeling protocol according to Enzo Life Sciences
 
 
Hybridization protocol Hybridization protocol available via www.agilent.com
Scan protocol Slides were scanned using the Agilent microarray scanner, protocol according to Agilent.
Description reference DNA is pooled DNA from the blood of 18 healthy individuals
Data processing Median Signal intensity minus median Background intensity; excluding negative values. Values represent normalized log2 ratio (Cy3/Cy5).
 
Submission date Aug 19, 2009
Last update date Jun 17, 2010
Contact name Daoud Sie
E-mail(s) d.sie@vumc.nl
Phone +31 20 4442428
Organization name Vrije Universiteit Medical Center
Department Pathology
Lab Microarray Core Facility
Street address De Boelelaan 1117
City Amsterdam
ZIP/Postal code 1081 HV
Country Netherlands
 
Platform ID GPL8687
Series (1)
GSE17715 Phenotypic and genomic analysis of an exceptional case of enteropathy associated T cell lymphoma

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy3/Cy5) representing test/normal

Data table
ID_REF VALUE
23 0.04
24 -0.08
25 -0.16
26 0.2
27 0.19
28 0.07
29 -0.23
30 0.05
31 0.05
32 -0.97
33 -0.35
34 -0.69
35 -0.11
36 0.06
37 -0.04
38 0.08
39 -0.36
40 0
41 -0.31
42 0.2

Total number of rows: 174334

Table truncated, full table size 2014 Kbytes.




Supplementary file Size Download File type/resource
GSM442200.txt.gz 18.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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