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Sample GSM443817 Query DataSets for GSM443817
Status Public on Nov 05, 2010
Title DNA methylation: HCC1008
Sample type genomic
 
Source name DNA from breast cancer cell line
Organism Homo sapiens
Characteristics cell line: HCC1008
catalog number: ATCC# CRL-2320
Extracted molecule genomic DNA
Extraction protocol performed as recommended by the Illumina
Label Illumina Infinium HM27 Assay
Label protocol Illumina Infinium HM27 Assay
 
Hybridization protocol Illumina Infinium HM27 Assay
Scan protocol Illumina Infinium HM27 Assay
Description Breast cancer cell line, ATCC# CRL-2320
Data processing default Illumina BeadStudio method
 
Submission date Aug 23, 2009
Last update date Nov 05, 2010
Contact name Raj Chari
E-mail(s) rchari@bccrc.ca
Organization name BC Cancer Research Centre
Department Cancer Genetics and Developmental Biology
Lab Wan Lam Lab
Street address 675 West 10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL8490
Series (2)
GSE17769 An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer: DNA methylation
GSE21541 An integrative multi-dimensional genetic and epigenetic strategy to identify aberrant genes and pathways in cancer

Data table header descriptions
ID_REF
VALUE AVG BETA VALUE
P_VALUE

Data table
ID_REF VALUE P_VALUE
cg00000292 0.8900673 3.68E-38
cg00002426 0.0842032 8.86E-07
cg00003994 0.0356156 3.68E-38
cg00005847 0.0487498 3.68E-38
cg00006414 0.04360465 3.68E-38
cg00007981 0.01718117 3.68E-38
cg00008493 0.9543771 3.68E-38
cg00008713 0.03217687 3.68E-38
cg00009407 0.08064516 3.68E-38
cg00010193 0.4861715 3.68E-38
cg00011459 0.8754361 4.03E-30
cg00012199 0.01447761 3.68E-38
cg00012386 0.01013677 3.68E-38
cg00012792 0.02115749 3.68E-38
cg00013618 0.1853462 3.68E-38
cg00014085 0.04364923 3.68E-38
cg00014837 0.6831589 2.38E-15
cg00015770 0.06003078 3.68E-38
cg00016968 0.398617 3.68E-38
cg00019495 0.05722714 1.24E-09

Total number of rows: 27578

Table truncated, full table size 824 Kbytes.




Supplementary file Size Download File type/resource
GSM443817_HCC1008_4308918024_J_Grn.idat.gz 371.3 Kb (ftp)(http) IDAT
GSM443817_HCC1008_4308918024_J_Red.idat.gz 358.9 Kb (ftp)(http) IDAT
Processed data included within Sample table

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