NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM444 Query DataSets for GSM444
Status Public on Jul 24, 2001
Title vjr N2 mixed control (red, channel 2) vs bn2-4 T4 (green, channel 1)
Sample type RNA
 
Channel 1
Source name bn2-4 T4 (green, channel 1)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Channel 2
Source name vjr N2 mixed control (red, channel 2)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
 
Description Category: germline
Subcategory: adult
Experimental details: synchronized glp-4(bn2) young adult mRNA (batch 4) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_10989
 
Submission date Jul 24, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL14
Series (1)
GSE5 Global profile of germline gene expression in C. elegans

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 493 481 1061 1118 849 287 269 226 715 941 .817 0 -.57 .78 70 72 1.25 1.485 .8 .673 .645 1049 185 16 31 1788 1803 -.57
2 461 459 113 448 267 196 181 152 225 377 .274 -100 1.289 39 56 .423 .503 2.363 1.989 .439 810 137 918 931 1798 1811 .992
3 497 485 337 805 540 287 265 223 454 678 .538 0 .431 1.281 70 74 .624 .742 1.602 1.349 .774 639 137 38 51 1788 1801 .431
4 456 443 16 374 190 197 184 155 160 315 0 0 3.321 1.342 18 51 .084 .1 11.875 9.994 644 137 938 951 1798 1811 3.321
5 482 471 178 681 412 279 269 226 347 573 .466 0 .962 1.496 41 56 .432 .513 2.315 1.948 .806 574 137 58 71 1788 1801 .962
6 487 476 47 411 218 207 193 162 183 346 .202 0 1.965 1.283 21 51 .216 .256 4.638 3.904 .262 681 137 958 971 1800 1813 1.965
7 480 475 294 1133 857 287 276 232 721 954 .686 0 1.295 2.43 60 75 .343 .408 2.915 2.453 1.595 684 185 74 89 1787 1802 1.295
8 619 483 399 736 528 281 208 175 444 619 .626 -100 1.192 16 56 .756 .898 1.323 1.114 .496 688 137 978 991 1801 1814 .155
9 494 483 2462 727 458 282 269 226 385 612 .697 0 -2.675 .204 81 62 5.376 6.387 .186 .157 .155 697 185 95 110 1787 1802 -2.675
10 488 467 386 415 212 228 203 171 178 349 .385 0 -1.113 .459 64 43 1.821 2.163 .549 .462 .302 550 137 998 1011 1800 1813 -1.113
11 510 491 189 548 289 272 259 218 243 461 .354 -100 1.278 44 46 .654 .777 1.529 1.287 .408 467 137 118 131 1789 1802 .364
12 504 484 301 608 394 240 214 180 332 512 .639 0 .14 1.216 56 64 .764 .908 1.309 1.102 .61 573 156 1019 1033 1802 1816 .14
13 481 468 921 1710 1495 229 215 181 1258 1439 .877 0 .45 1.585 74 80 .616 .732 1.623 1.366 1.31 1038 198 466 482 1793 1809 .45
14 450 441 265 1606 1432 211 174 146 1205 1352 .686 0 2.185 4.918 53 72 .185 .22 5.404 4.548 2.662 1024 185 1367 1382 1802 1817 2.185
15 477 465 5814 6008 5793 220 215 181 4876 5057 .942 0 -.254 .995 80 83 1.004 1.192 .996 .839 .919 753 231 485 502 1794 1811 -.254
16 434 425 74 278 115 175 163 137 97 234 .118 0 .387 .855 34 40 .643 .765 1.554 1.308 .115 607 137 1390 1403 1803 1816 .387
17 481 469 251 3134 2930 215 204 172 2466 2638 .629 0 3.296 9.074 48 74 .086 .102 11.673 9.825 5.041 828 250 505 523 1793 1811 3.296
18 469 426 173 653 478 223 175 147 402 550 .537 0 1.217 1.959 40 28 .362 .43 2.763 2.325 1.036 633 185 1406 1421 1802 1817 1.217
19 478 467 210 484 282 218 202 170 237 407 .473 0 .177 .985 43 62 .745 .885 1.343 1.13 .459 917 287 525 544 1793 1812 .177
20 522 472 2310 7825 7606 287 219 184 6401 6586 .71 0 1.471 5.145 54 75 .304 .361 3.293 2.771 1.107 579 198 1426 1442 1801 1817 1.471

Total number of rows: 13323

Table truncated, full table size 1652 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap