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Sample GSM449159 Query DataSets for GSM449159
Status Public on Sep 05, 2009
Title S015
Sample type RNA
 
Source name prostate, S015
Organism Homo sapiens
Characteristics patient id: P069
sample type (t/tumor; biopsy; ctrl/autopsy sample): T
percentage of tumor: 0
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 50 microgram (10 microgram for biopsy tissue) of total RNA samples of each cases were amplified and labeled with biotin using Ovation RNA Amplification System V2 and FL-Ovation cDNA Biotin Module V2 (NuGen Inc.).
 
Hybridization protocol Following Affymetrix protocol.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Sep 03, 2009
Last update date Sep 04, 2009
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL570
Series (1)
GSE17951 Gene expression analysis of prostate cancer samples using Affymetrix U133Plus2 array

Data table header descriptions
ID_REF
VALUE log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 9.923977508
1053_at 7.614314382
117_at 6.417911367
121_at 6.86700843
1255_g_at 3.84227883
1294_at 9.272013407
1316_at 6.42338753
1320_at 5.574704873
1405_i_at 8.702575282
1431_at 5.825684907
1438_at 5.514839953
1487_at 8.459211714
1494_f_at 5.288390087
1552256_a_at 6.967409086
1552257_a_at 8.914612679
1552258_at 4.27534463
1552261_at 6.30352412
1552263_at 5.460782134
1552264_a_at 7.262204965
1552266_at 5.171614202

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM449159.CEL.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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