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Sample GSM449162 Query DataSets for GSM449162
Status Public on Sep 05, 2009
Title S018
Sample type RNA
 
Source name prostate, S018
Organism Homo sapiens
Characteristics patient id: P081
sample type (t/tumor; biopsy; ctrl/autopsy sample): T
percentage of tumor: 55
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 50 microgram (10 microgram for biopsy tissue) of total RNA samples of each cases were amplified and labeled with biotin using Ovation RNA Amplification System V2 and FL-Ovation cDNA Biotin Module V2 (NuGen Inc.).
 
Hybridization protocol Following Affymetrix protocol.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Sep 03, 2009
Last update date Sep 04, 2009
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL570
Series (1)
GSE17951 Gene expression analysis of prostate cancer samples using Affymetrix U133Plus2 array

Data table header descriptions
ID_REF
VALUE log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.53287495
1053_at 8.601730004
117_at 7.517775365
121_at 6.566161857
1255_g_at 3.273121596
1294_at 8.318228356
1316_at 6.893186243
1320_at 5.570515699
1405_i_at 7.328633737
1431_at 5.604486654
1438_at 5.825275787
1487_at 7.881338246
1494_f_at 4.659380095
1552256_a_at 7.042907294
1552257_a_at 10.86332725
1552258_at 4.444731903
1552261_at 6.266618294
1552263_at 5.466420583
1552264_a_at 7.615233947
1552266_at 3.529886799

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM449162.CEL.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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