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| Status |
Public on Dec 07, 2020 |
| Title |
ATAC-Seq wt_1 |
| Sample type |
SRA |
| |
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| Source name |
murine ESC
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| Organism |
Mus musculus |
| Characteristics |
cell type: wildtype
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| Growth protocol |
cells grown in 6 well dishes
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Cells were processed according to Volk et al., 2018, ESCs were transposed for 30mins
Libraries were made according to Volk et al, 2018
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| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NextSeq 500 |
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| Description |
ATAC-Seq
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| Data processing |
Reads were aligned using Bowtie2 (v2.3.4.3)
Genome_build: mm9
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| Submission date |
Apr 28, 2020 |
| Last update date |
Dec 08, 2020 |
| Contact name |
Sridhar Rao |
| E-mail(s) |
sridhar.rao@bcw.edu
|
| Phone |
4149373841
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| Organization name |
BloodCenter of Wisconsin
|
| Department |
Blood Research Institute
|
| Street address |
8727 Watertown Plank Road
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| City |
Milwaukee |
| State/province |
WI |
| ZIP/Postal code |
53226 |
| Country |
USA |
| |
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| Platform ID |
GPL19057 |
| Series (2) |
| GSE143993 |
Genome editing demonstrates that the -5 kb Nanog enhancer regulates Nanog expression by modulating RNAPII initiation and/or recruitment |
| GSE149531 |
Defining a critical Nanog enhancer using chromatin-focused approaches identifies RNAPII recruitment as required for expression [ATAC-Seq] |
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| Relations |
| BioSample |
SAMN14764570 |
| SRA |
SRX8199958 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4504487_wt_1_atac.bedgraph.gz |
109.2 Mb |
(ftp)(http) |
BEDGRAPH |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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