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Sample GSM455 Query DataSets for GSM455
Status Public on Jul 24, 2001
Title REF-vjr (red, channel 2) vs bn2 #3 L3 (green, channel 1)
Sample type RNA
 
Channel 1
Source name bn2 #3 L3 (green, channel 1)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
Channel 2
Source name REF-vjr (red, channel 2)
Organism Caenorhabditis elegans
Extracted molecule total RNA
 
 
Description Category: germline
Subcategory: L3
Experimental details: synchronized glp-4(bn2) L3 mRNA (batch 3) was hybridized against the vjr reference mRNA pool to be used for the wild type to no germ line (glp-4) comparisons
Scanning Software: Axon GenePix
Software version: unknown
Scanning parameters:
Lot batch = rosetta_11002
 
Submission date Jul 24, 2001
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL14
Series (1)
GSE5 Global profile of germline gene expression in C. elegans

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 365 361 1648 1176 949 241 227 130 545 675 .841 0 -1.597 .576 82 77 1.737 3.025 .576 .331 .576 985 185 52 67 1793 1808 -1.597
2 364 353 110 361 120 260 241 138 69 207 .303 -100 1.2 28 38 .917 1.597 1.091 .626 .19 596 103 954 965 1805 1816 -.675
3 371 369 604 871 633 251 238 137 363 500 .829 0 -.733 .95 73 70 .954 1.662 1.048 .602 .929 583 137 72 85 1794 1807 -.733
4 385 375 21 303 32 296 271 156 18 174 .681 0 -.193 1.559 12 13 .656 1.143 1.524 .875 .696 523 103 974 985 1805 1816 -.193
5 359 356 144 481 246 253 235 135 141 276 .738 0 -.028 1.659 35 43 .585 1.02 1.708 .981 1.045 595 137 93 106 1795 1808 -.028
6 387 371 134 461 181 313 280 161 104 265 .849 0 -.367 1.283 18 19 .74 1.289 1.351 .776 1.137 545 103 995 1006 1807 1818 -.367
7 355 353 668 1369 1130 255 239 137 649 786 .884 0 -.042 1.711 69 74 .591 1.03 1.692 .971 1.354 746 185 110 125 1794 1809 -.042
8 440 358 216 667 418 314 249 143 240 383 .628 0 .152 2.401 13 57 .517 .9 1.935 1.111 .93 674 137 1014 1027 1807 1820 .152
9 358 359 1688 688 449 254 239 137 258 395 .782 0 -2.711 .241 81 64 3.759 6.548 .266 .153 .309 752 185 132 147 1794 1809 -2.711
10 449 356 800 482 235 311 247 142 135 277 .73 0 -2.568 .243 56 23 3.404 5.929 .294 .169 .358 522 137 1035 1048 1806 1819 -2.568
11 366 366 277 541 300 252 241 138 172 311 .865 -100 1.325 42 40 .923 1.608 1.083 .622 .977 492 137 153 166 1796 1809 -.685
12 358 351 761 865 628 252 237 136 361 497 .921 0 -1.078 .878 69 69 1.212 2.111 .825 .474 .768 601 185 1054 1069 1806 1821 -1.078
13 368 352 1513 2919 2683 268 236 135 1540 1676 .928 0 .026 1.753 77 77 .564 .982 1.773 1.018 1.627 988 198 503 519 1800 1816 .026
14 362 350 351 4316 4070 319 246 141 2337 2478 .751 0 2.735 12.496 38 72 .086 .15 11.595 6.657 6.651 1024 185 1402 1417 1808 1823 2.735
15 348 346 6962 7306 7068 251 238 137 4058 4195 .974 0 -.779 1.051 76 77 .985 1.716 1.015 .583 .993 850 250 523 541 1800 1818 -.779
16 371 367 281 953 708 261 245 141 406 547 .82 0 .533 2.13 50 57 .397 .691 2.52 1.447 2.273 651 137 1426 1439 1811 1824 .533
17 383 346 571 6602 6358 315 244 140 3650 3790 .881 0 2.676 10.409 45 68 .09 .156 11.135 6.393 8.615 733 231 542 559 1801 1818 2.676
18 374 369 544 1813 1562 262 251 144 897 1041 .834 0 .721 2.533 76 74 .348 .607 2.871 1.649 2.916 724 185 1442 1457 1810 1825 .721
19 383 353 1193 2483 2247 300 236 135 1290 1426 .928 0 .113 1.923 70 75 .531 .925 1.883 1.081 1.638 878 287 560 579 1800 1819 .113
20 372 369 3455 8505 8255 263 250 144 4739 4883 .97 0 .456 2.359 80 83 .419 .729 2.389 1.372 2.33 615 185 1462 1477 1809 1824 .456

Total number of rows: 13323

Table truncated, full table size 1662 Kbytes.




Supplementary data files not provided

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