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Sample GSM4620 Query DataSets for GSM4620
Status Public on Feb 27, 2003
Title 1hr MK-CA1 vs 1hr MK C+S-CA1
Sample type RNA
 
Channel 1
Source name CA1 Hippocampus, 1hr MK-CA1 was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name CA1 Hippocampus, 1hr MK C+S-CA1 was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 1hr after MK experimental mice received their last shock treatment.
MK C+S: MK-801 & Context + Shock: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight) 1hr prior to contextual fear conditioning that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted 1hr after the last shock treatment.
 
Submission date Feb 25, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE317 MK-CA1 vs MK C+S-CA1
GSE1782 A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 100567 65516.5 65516 0.692935 1036.59 1034 37.615 42158.9 30382.3 31355 6429.8 1020.36 1013 46.7741 -0.377567 0
2 55.066 990.125 989 22.8213 1021.34 1021.5 26.6804 51.737 975.875 989 41.7449 1013.73 1009.5 47.7916 0 0
3 54.1811 973.8 979.5 29.1414 1025.11 1024 25.235 63.4612 937.2 941.5 21.5885 1020.45 1026 60.9835 0 0
4 49.8325 1018.46 1019.5 19.375 1022.53 1022.5 25.8924 57.2917 1014.04 1023 63.2108 1029.63 1035 46.7325 0 0
5 55.4669 977.538 973 25.6503 1027.69 1029 25.8338 51.3611 960.615 951.5 46.9 1024.21 1020 49.3558 0 0
6 43.7651 1021.65 1021 26.1991 1029.07 1029 23.0728 62.8785 1025.65 1035.5 56.9919 1037.28 1033 51.324 0 0
7 46.3578 983.385 983.5 21.909 1024.45 1022.5 21.5912 53.3158 975.615 971.5 38.3573 1030.43 1032 51.2342 0 0
8 4097.4 3684.36 3677 164.962 1025.58 1022 23.6359 3772.42 3540.77 3546 183.853 1022.19 1018.5 56.1812 -0.0358885 -0.119219016
9 821.871 1514.6 1506 63.0033 1025.15 1028 26.2217 704.246 1472.24 1466 63.847 1027.9 1026 55.0415 -0.0670796 -0.222833608
10 534.43 1323.08 1321.5 42.4171 1025.61 1023 28.0708 413.321 1272.38 1271.5 56.2802 1024.79 1025 58.6734 -0.111604 -0.370740463
11 54.6218 1022.83 1025 25.7474 1023.94 1023 27.4545 70.9062 1022.29 1022 51.3127 1019.67 1011.5 57.1986 0 0
12 78188.7 51015.3 50190 6006.69 1028.51 1026 26.834 79683.9 56725.1 56921 6055.68 1028.03 1029 60.8861 0.00822682 0.027328904
13 1097.1 1700.92 1695.5 39.3964 1027.54 1027 24.7867 991.225 1654.46 1640.5 100.363 1016.88 1020.5 53.0988 -0.044074 -0.146410659
14 71.4573 1031.22 1036 26.7938 1022.5 1021 27.8827 91.5552 1034.17 1032 45.3267 1014.21 1012 49.8156 0.107636 0
15 10206 7682.3 7471 747.253 1017.04 1017.5 26.5135 8081.16 6479.63 6452 595.047 1020.41 1021 51.1298 -0.10138 -0.33677707
16 197.879 1094.3 1096 31.6128 1010.99 1010 22.6286 151.961 1084.74 1077 40.0457 1020.44 1016 63.3092 -0.114668 0
17 3625.77 3354.76 3332 178.314 1006.01 1006 26.6637 3843.14 3591.76 3553 275.515 1024.55 1024 53.7629 0.0252854 0.083996281
18 196.67 1088.73 1104 52.498 1005.45 1004 37.0079 206.957 1133.31 1132.5 84.9267 1027.48 1027 60.8238 0.0221408 0.073550146
19 89.8122 1020.4 1021 25.4755 1001.18 1003 29.4292 87.683 1022.2 1031 48.3623 1005.6 1003 53.9693 -0.0104196 0
20 834.584 1495.93 1490 33.4836 997.014 999 24.8039 773.311 1495 1496 69.1565 1003.33 1001 51.4883 -0.0331156 -0.110007642

Total number of rows: 16281

Table truncated, full table size 1966 Kbytes.




Supplementary data files not provided

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