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Sample GSM462034 Query DataSets for GSM462034
Status Public on Nov 12, 2009
Title -Ca_replicate_2_RMA_normalized
Sample type RNA
 
Source name RNA isolated from primary human keratinocytes in subconfluent growth conditions
Organism Homo sapiens
Characteristics cell type: primary keratinocytes
gender: male
tissue: foreskin
status: undifferentiated
Growth protocol Keratinocytes were grown in Gibco SFM medium.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kits were used to isolate total RNA.
Label biotin
Label protocol Labeling was performed by the Stanford P.A.N. facility.
 
Hybridization protocol Hybrization was performed by the Stanford P.A.N. facility.
Scan protocol Scanning was performed by the Stanford P.A.N. facility.
Description Human primary keratinocytes isolated from multiple foreskin samples; passage is less than 4.
Data processing Raw Cel files was loaded into GeneSpring GX software and RMA normalized.
 
Submission date Oct 14, 2009
Last update date Aug 28, 2018
Contact name Paul A Khavari
Organization name Stanford University
Department Dermatology
Lab Khavari Lab
Street address 259 Campus Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5168
Country USA
 
Platform ID GPL570
Series (1)
GSE18590 DNMT1 Maintains Progenitor Function in Self-Renewing Somatic Tissue
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA-normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 451.4422
AFFX-BioB-M_at 584.2863
AFFX-BioB-3_at 396.21335
AFFX-BioC-5_at 1062.1646
AFFX-BioC-3_at 1499.3082
AFFX-BioDn-5_at 2472.218
AFFX-BioDn-3_at 5879.181
AFFX-CreX-5_at 14491.658
AFFX-CreX-3_at 20291.46
AFFX-DapX-5_at 3676.016
AFFX-DapX-M_at 6714.797
AFFX-DapX-3_at 9902.995
AFFX-LysX-5_at 404.96744
AFFX-LysX-M_at 552.5107
AFFX-LysX-3_at 942.00006
AFFX-PheX-5_at 1024.5193
AFFX-PheX-M_at 1206.8303
AFFX-PheX-3_at 984.36035
AFFX-ThrX-5_at 1334.8135
AFFX-ThrX-M_at 1880.791

Total number of rows: 54675

Table truncated, full table size 1093 Kbytes.




Supplementary file Size Download File type/resource
GSM462034.CEL.gz 5.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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