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Sample GSM462037 Query DataSets for GSM462037
Status Public on Nov 12, 2009
Title +Ca_replicate_1_RMA_normalized
Sample type RNA
 
Source name RNA isolated from primary human keratinocytes in differentiation conditions
Organism Homo sapiens
Characteristics cell type: primary keratinocytes
gender: male
tissue: foreskin
status: differentiated
Growth protocol Keratinocytes were grown in Gibco SFM medium till 100% confluent with addition of 1.2 mM Ca2+ for 3 Days to induce differentiation.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kits were used to isolate total RNA.
Label biotin
Label protocol Labeling was performed by the Stanford P.A.N. facility.
 
Hybridization protocol Hybrization was performed by the Stanford P.A.N. facility.
Scan protocol Scanning was performed by the Stanford P.A.N. facility.
Description Human primary keratinocytes isolated from multiple foreskin samples; passage is less than 4.
Data processing Raw Cel files was loaded into GeneSpring GX software and RMA normalized.
 
Submission date Oct 14, 2009
Last update date Aug 28, 2018
Contact name Paul A Khavari
Organization name Stanford University
Department Dermatology
Lab Khavari Lab
Street address 259 Campus Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5168
Country USA
 
Platform ID GPL570
Series (1)
GSE18590 DNMT1 Maintains Progenitor Function in Self-Renewing Somatic Tissue
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA-normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 423.9266
AFFX-BioB-M_at 520.62244
AFFX-BioB-3_at 364.85803
AFFX-BioC-5_at 1088.1724
AFFX-BioC-3_at 1357.2684
AFFX-BioDn-5_at 2403.5027
AFFX-BioDn-3_at 5436.766
AFFX-CreX-5_at 14010.283
AFFX-CreX-3_at 19159.646
AFFX-DapX-5_at 4482.9595
AFFX-DapX-M_at 7785.2466
AFFX-DapX-3_at 10997.127
AFFX-LysX-5_at 451.2635
AFFX-LysX-M_at 590.33496
AFFX-LysX-3_at 1059.4606
AFFX-PheX-5_at 1229.4869
AFFX-PheX-M_at 1335.8912
AFFX-PheX-3_at 1096.6841
AFFX-ThrX-5_at 1588.138
AFFX-ThrX-M_at 2198.8293

Total number of rows: 54675

Table truncated, full table size 1093 Kbytes.




Supplementary file Size Download File type/resource
GSM462037.CEL.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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