NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM462041 Query DataSets for GSM462041
Status Public on Nov 12, 2009
Title +Ca_replicate_2_RMA_normalized
Sample type RNA
 
Source name RNA isolated from primary human keratinocytes in differentiation conditions
Organism Homo sapiens
Characteristics cell type: primary keratinocytes
gender: male
tissue: foreskin
status: differentiated
Growth protocol Keratinocytes were grown in Gibco SFM medium till 100% confluent with addition of 1.2 mM Ca2+ for 3 Days to induce differentiation.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kits were used to isolate total RNA.
Label biotin
Label protocol Labeling was performed by the Stanford P.A.N. facility.
 
Hybridization protocol Hybrization was performed by the Stanford P.A.N. facility.
Scan protocol Scanning was performed by the Stanford P.A.N. facility.
Description Human primary keratinocytes isolated from multiple foreskin samples; passage is less than 4.
Data processing Raw Cel files was loaded into GeneSpring GX software and RMA normalized.
 
Submission date Oct 14, 2009
Last update date Aug 28, 2018
Contact name Paul A Khavari
Organization name Stanford University
Department Dermatology
Lab Khavari Lab
Street address 259 Campus Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5168
Country USA
 
Platform ID GPL570
Series (1)
GSE18590 DNMT1 Maintains Progenitor Function in Self-Renewing Somatic Tissue
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE RMA-normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 497.20465
AFFX-BioB-M_at 635.0205
AFFX-BioB-3_at 449.16772
AFFX-BioC-5_at 1228.6176
AFFX-BioC-3_at 1601.5321
AFFX-BioDn-5_at 3029.3743
AFFX-BioDn-3_at 6194.148
AFFX-CreX-5_at 15405.548
AFFX-CreX-3_at 21710.955
AFFX-DapX-5_at 3351.2122
AFFX-DapX-M_at 6370.992
AFFX-DapX-3_at 9422.747
AFFX-LysX-5_at 386.4968
AFFX-LysX-M_at 519.2593
AFFX-LysX-3_at 984.68445
AFFX-PheX-5_at 927.84033
AFFX-PheX-M_at 1124.6204
AFFX-PheX-3_at 954.99365
AFFX-ThrX-5_at 1091.2056
AFFX-ThrX-M_at 1652.2334

Total number of rows: 54675

Table truncated, full table size 1093 Kbytes.




Supplementary file Size Download File type/resource
GSM462041.CEL.gz 5.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap