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Sample GSM4624 Query DataSets for GSM4624
Status Public on Feb 28, 2003
Title 2hr MK-DG vs 2hr MK C+S-DG
Sample type RNA
 
Channel 1
Source name DG Hippocampus, 2hr MK-DG was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name DG Hippocampus, 2hr MK C+S-DG was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 2hr after MK experimental mice received their last shock treatment.
MK C+S: MK-801 & Context + Shock: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight) 1hr prior to contextual fear conditioning that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted 2hr after the last shock treatment.
 
Submission date Feb 25, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE318 MK-DG vs MK C+S-DG
GSE1782 A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 13748.1 65516.7 65517 0.722832 1844.28 1836.5 86.4994 11490.1 65516.7 65517 0.669636 2020.04 2000.5 146.461 -0.0779207 0
2 836.339 2201.58 2204.5 71.1214 1792.57 1792 66.2131 879.632 2583.85 2600 68.2523 1954.47 1947 92.2939 0.0219188 0
3 899.666 2512.5 2511 236.261 1771.39 1772 62.7709 995.822 3226.12 3218 361.588 1911.32 1910 87.0368 0.0441003 0
4 846.403 2254.08 2252 221.322 1802.95 1797.5 66.9355 866.934 2514.58 2463.5 322.614 1970.4 1969 118.587 0.0104088 0
5 879.471 2428.5 2446.5 181.588 1788.1 1793 60.4605 969.976 3103.43 3160 284.716 1939.81 1926 105.407 0.0425395 0
6 839.381 2179.85 2176 65.7786 1766.71 1761 61.4094 852.686 2371.07 2370 91.8694 1911.1 1907 84.2643 0.00682953 0
7 906.223 2523.85 2503.5 198.749 1753.11 1748 49.6641 993.084 3180.69 3112 316.45 1886.26 1884 75.4863 0.0397508 0
8 963.458 2798.9 2796.5 61.9518 1775.23 1769 68.9594 949.174 2927.23 2921.5 72.6421 1934.29 1941 102.895 -0.00648699 -0.021549314
9 843.442 2236.92 2240.5 51.9915 1803.65 1799.5 74.9703 856.414 2474.04 2474.5 86.8514 1993.18 1987 112.318 0.00662838 0.022019002
10 811.955 2038.04 2040.5 63.7379 1760.66 1756.5 85.2793 818.715 2159.85 2132 96.8019 1901.41 1864 158.034 0.00360081 0.011961632
11 821.137 2146.48 2172 61.6088 1824.08 1830.5 77.0566 830.386 2357.19 2357 72.1468 2028.52 2024 131.391 0.00486428 0.016158788
12 2665.51 11127.4 10853 1611.28 1798.75 1796.5 68.2422 3049.01 15563.1 15313 2611.99 1977.33 1972.5 119.457 0.0583784 0.193928847
13 904.582 2524.46 2511.5 98.1913 1787.74 1788 72.3091 904.942 2691.81 2690 101.156 1947.09 1934 99.3709 0.000172741 0.000573833
14 846.461 2229.11 2221 61.6194 1780.89 1784.5 65.7235 858.794 2434.93 2445 81.6521 1941.17 1941.5 84.3693 0.00628202 0.020868419
15 1485.88 5364.54 5225 390.821 1807.54 1810 56.5638 1277.59 4842.15 4819.5 307.441 1982.43 1974 95.0513 -0.0655911 -0.217888918
16 818.663 2161.86 2162.5 51.5441 1853.19 1836 98.607 821.805 2332.27 2340 42.3108 2057.27 2028 155.79 0.00166323 0.00552513
17 968.5 2927.19 2950 175.995 1881.81 1880.5 68.2426 943.514 3074.74 3157 202.609 2119.43 2115.5 110.96 -0.0113511 -0.037707538
18 822.14 2179.22 2208 120.558 1853.42 1825 110.92 826.515 2351.07 2354 109.211 2047.59 2028 142.376 0.00230532 0.007658107
19 835.859 2158.16 2161 36.2603 1764.68 1767 57.9671 842.387 2307.28 2315 67.9507 1910.19 1904 99.0151 0.0033783 0.01122247
20 818.689 2111.18 2115.5 71.4236 1803.25 1791 67.2638 818.846 2237.21 2233 96.3033 1981.16 1976 115.973 8.33E-05 0.000276745

Total number of rows: 16281

Table truncated, full table size 2058 Kbytes.




Supplementary data files not provided

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