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Sample GSM462671 Query DataSets for GSM462671
Status Public on Mar 15, 2010
Title adult_Malignant germ cell tumor_YST-6 [mRNA]
Sample type RNA
 
Source name Yolk sac tumor replicate 6 of 8
Organism Homo sapiens
Characteristics tumor composition: Pure
anatomical site: Testis
gender: Male
developmental stage: adult
Treatment protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Growth protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Extracted molecule total RNA
Extraction protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Label biotin
Label protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
 
Hybridization protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Scan protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Description GEO reference number: GSM72469
Data processing Pre-processing of microarray .cel (CEL) files (including background correction and normalization) was performed using the Bioconductor package Robust Multi-Array Average (RMA) in the statistical software environment R.
 
Submission date Oct 17, 2009
Last update date Mar 11, 2010
Contact name Matthew Jonathan Murray
E-mail(s) mjm16@cam.ac.uk
Phone 07976413769
Organization name MRC Cancer Cell Unit
Department MRC/Hutchison Research Centre
Lab 2.5
Street address Box 197, Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL96
Series (1)
GSE18155 Malignant Germ Cell Tumors Display Common microRNA Profiles Resulting in Global Changes in Expression of mRNA Targets
Relations
Reanalysis of GSM72469

Data table header descriptions
ID_REF
VALUE Post RMA normalization signal intensity

Data table
ID_REF VALUE
1007_s_at 10.25701527
1053_at 8.331952488
117_at 7.422608063
121_at 9.492521035
1255_g_at 5.257863835
1294_at 8.587957993
1316_at 5.953632197
1320_at 5.913622903
1405_i_at 7.389558518
1431_at 4.981456644
1438_at 8.521065847
1487_at 8.748513427
1494_f_at 7.722970531
1598_g_at 10.80011684
160020_at 9.254841955
1729_at 8.179920448
177_at 6.361445889
1773_at 6.559153977
179_at 9.876199045
1861_at 7.463844243

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM462671.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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