NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM462678 Query DataSets for GSM462678
Status Public on Mar 15, 2010
Title adult_Malignant germ cell tumor_Seminoma-5 [mRNA]
Sample type RNA
 
Source name Seminoma replicate 5 of 12
Organism Homo sapiens
Characteristics tumor composition: Pure
anatomical site: Testis
gender: Male
developmental stage: adult
Treatment protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Growth protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Extracted molecule total RNA
Extraction protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Label biotin
Label protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
 
Hybridization protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Scan protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Description GEO reference number: GSM72452
Data processing Pre-processing of microarray .cel (CEL) files (including background correction and normalization) was performed using the Bioconductor package Robust Multi-Array Average (RMA) in the statistical software environment R.
 
Submission date Oct 17, 2009
Last update date Mar 11, 2010
Contact name Matthew Jonathan Murray
E-mail(s) mjm16@cam.ac.uk
Phone 07976413769
Organization name MRC Cancer Cell Unit
Department MRC/Hutchison Research Centre
Lab 2.5
Street address Box 197, Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL96
Series (1)
GSE18155 Malignant Germ Cell Tumors Display Common microRNA Profiles Resulting in Global Changes in Expression of mRNA Targets
Relations
Reanalysis of GSM72452

Data table header descriptions
ID_REF
VALUE Post RMA normalization signal intensity

Data table
ID_REF VALUE
1007_s_at 9.640695635
1053_at 7.870213695
117_at 7.669467896
121_at 9.69176652
1255_g_at 5.858618828
1294_at 9.307833031
1316_at 6.055045374
1320_at 5.853772884
1405_i_at 9.984357418
1431_at 5.388050392
1438_at 7.883942076
1487_at 8.744593713
1494_f_at 7.898911697
1598_g_at 10.50981362
160020_at 10.07414139
1729_at 8.740291329
177_at 6.880509974
1773_at 6.991717214
179_at 10.02724614
1861_at 7.108720773

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM462678.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap