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Sample GSM462680 Query DataSets for GSM462680
Status Public on Mar 15, 2010
Title adult_Malignant germ cell tumor_Seminoma-7 [mRNA]
Sample type RNA
 
Source name Seminoma replicate 7 of 12
Organism Homo sapiens
Characteristics tumor composition: Pure
anatomical site: Testis
gender: Male
developmental stage: adult
Treatment protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Growth protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Extracted molecule total RNA
Extraction protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Label biotin
Label protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
 
Hybridization protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Scan protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Description GEO reference number: GSM72454
Data processing Pre-processing of microarray .cel (CEL) files (including background correction and normalization) was performed using the Bioconductor package Robust Multi-Array Average (RMA) in the statistical software environment R.
 
Submission date Oct 17, 2009
Last update date Mar 11, 2010
Contact name Matthew Jonathan Murray
E-mail(s) mjm16@cam.ac.uk
Phone 07976413769
Organization name MRC Cancer Cell Unit
Department MRC/Hutchison Research Centre
Lab 2.5
Street address Box 197, Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL96
Series (1)
GSE18155 Malignant Germ Cell Tumors Display Common microRNA Profiles Resulting in Global Changes in Expression of mRNA Targets
Relations
Reanalysis of GSM72454

Data table header descriptions
ID_REF
VALUE Post RMA normalization signal intensity

Data table
ID_REF VALUE
1007_s_at 9.957620238
1053_at 9.277230269
117_at 7.137354526
121_at 9.557129367
1255_g_at 5.804900217
1294_at 8.183530639
1316_at 5.884923257
1320_at 5.928119459
1405_i_at 8.499079762
1431_at 5.439750761
1438_at 8.153724927
1487_at 8.163477571
1494_f_at 7.603909157
1598_g_at 9.947707914
160020_at 8.823899842
1729_at 7.708536918
177_at 6.44895143
1773_at 7.296050322
179_at 9.836328054
1861_at 6.519078145

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM462680.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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