NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM462685 Query DataSets for GSM462685
Status Public on Mar 15, 2010
Title adult_Malignant germ cell tumor_Seminoma-12 [mRNA]
Sample type RNA
 
Source name Seminoma replicate 12 of 12
Organism Homo sapiens
Characteristics tumor composition: Pure
anatomical site: Testis
gender: Male
developmental stage: adult
Treatment protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Growth protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Extracted molecule total RNA
Extraction protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Label biotin
Label protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
 
Hybridization protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Scan protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Description GEO reference number: GSM72485
Data processing Pre-processing of microarray .cel (CEL) files (including background correction and normalization) was performed using the Bioconductor package Robust Multi-Array Average (RMA) in the statistical software environment R.
 
Submission date Oct 17, 2009
Last update date Mar 11, 2010
Contact name Matthew Jonathan Murray
E-mail(s) mjm16@cam.ac.uk
Phone 07976413769
Organization name MRC Cancer Cell Unit
Department MRC/Hutchison Research Centre
Lab 2.5
Street address Box 197, Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL96
Series (1)
GSE18155 Malignant Germ Cell Tumors Display Common microRNA Profiles Resulting in Global Changes in Expression of mRNA Targets
Relations
Reanalysis of GSM72485

Data table header descriptions
ID_REF
VALUE Post RMA normalization signal intensity

Data table
ID_REF VALUE
1007_s_at 10.10360264
1053_at 8.782472439
117_at 7.227910946
121_at 9.583631426
1255_g_at 5.933446538
1294_at 8.487805213
1316_at 6.000960186
1320_at 5.988633319
1405_i_at 8.530173433
1431_at 5.193014153
1438_at 8.353295087
1487_at 8.495302768
1494_f_at 7.919460378
1598_g_at 9.618768705
160020_at 9.021243599
1729_at 7.878601583
177_at 6.383214633
1773_at 6.944339578
179_at 10.04684
1861_at 6.764558771

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM462685.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap