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Sample GSM462687 Query DataSets for GSM462687
Status Public on Mar 15, 2010
Title adult_Control_Testis-2 [mRNA]
Sample type RNA
 
Source name Normal gonadal control replicate 2 of 5
Organism Homo sapiens
Characteristics tumor composition: N/A
anatomical site: Testis
gender: Male
developmental stage: adult
Treatment protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Growth protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Extracted molecule total RNA
Extraction protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Label biotin
Label protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
 
Hybridization protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Scan protocol As per published paper: Korkola et al, Cancer Research 2006:66;820-7; PMID 16424014
Description GEO reference number: GSM72496
Data processing Pre-processing of microarray .cel (CEL) files (including background correction and normalization) was performed using the Bioconductor package Robust Multi-Array Average (RMA) in the statistical software environment R.
 
Submission date Oct 17, 2009
Last update date Mar 11, 2010
Contact name Matthew Jonathan Murray
E-mail(s) mjm16@cam.ac.uk
Phone 07976413769
Organization name MRC Cancer Cell Unit
Department MRC/Hutchison Research Centre
Lab 2.5
Street address Box 197, Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL96
Series (1)
GSE18155 Malignant Germ Cell Tumors Display Common microRNA Profiles Resulting in Global Changes in Expression of mRNA Targets
Relations
Reanalysis of GSM72496

Data table header descriptions
ID_REF
VALUE Post RMA normalization signal intensity

Data table
ID_REF VALUE
1007_s_at 9.425410569
1053_at 7.892436174
117_at 7.161249539
121_at 9.690337662
1255_g_at 7.621180884
1294_at 7.746127257
1316_at 6.006697669
1320_at 6.850609162
1405_i_at 5.663056768
1431_at 5.419102415
1438_at 7.763917399
1487_at 7.944975231
1494_f_at 7.638880425
1598_g_at 11.46888859
160020_at 8.860397487
1729_at 7.732484329
177_at 6.540312401
1773_at 7.003429955
179_at 9.66848122
1861_at 7.277304033

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM462687.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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