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Sample GSM4631 Query DataSets for GSM4631
Status Public on Feb 27, 2003
Title 6hr MK-DG vs 6hr MK C+S-DG
Sample type RNA
 
Channel 1
Source name DG Hippocampus, 6hr MK-DG was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name DG Hippocampus, 6hr MK C+S-DG was labeled with Cyanine-5 (red)
Organism Mus musculus
Extracted molecule total RNA
 
 
Description MK: MK-801. Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight). RNA from control mice were extracted 6hr after MK experimental mice received their last shock treatment.
MK C+S: MK-801 & Context + Shock: Young male C57BL/6J mice received an injection of MK-801 (300 micro-g per g body weight) 1hr prior to contextual fear conditioning that consisted of: Placement into a novel spatial context for 2 min. After 2 min, a 1 sec (0.5 mA) shock was administered through a floor grid. The 2 min-1 sec shock paradigm was repeated for a total of 3 shocks. 1 min after the last shock, animals were removed to their homecage. RNA was extracted 6hr after the last shock treatment.
 
Submission date Feb 25, 2003
Last update date May 27, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE318 MK-DG vs MK C+S-DG
GSE1782 A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel

Data table header descriptions
ID_REF Feature number which correpond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computation of log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 130738 65516.7 65517 0.628796 1193.67 1193 35.8263 106189 65516.5 65516 0.707107 756.447 755 27.1161 -0.0903223 0
2 302.536 1287.78 1293 25.6603 1180.46 1176 27.9339 311.712 847.478 847 24.4203 749.526 748 24.9248 0.0129767 0
3 155.548 1209.21 1201 49.0935 1189.68 1189 34.8909 133.491 755.958 757.5 60.7979 748.176 749 32.9448 -0.0664126 0
4 323.656 1295.5 1294.5 38.041 1176.06 1174 34.2282 320.655 859.091 857 30.2685 756.327 753 31.176 -0.00404563 0
5 87.5957 1162.72 1165 20.5964 1183.46 1185 34.6159 80.5043 748.96 752 20.7655 767.869 766 26.3376 -0.0366637 0
6 367.238 1333.81 1325 43.167 1189.48 1185 28.2022 358.119 899.63 903 32.7122 777.096 777 24.1857 -0.01092 0
7 217.667 1238.46 1218.5 72.3145 1180.86 1181.5 29.2245 222.04 808.667 800 53.7843 756.733 758.5 26.6609 0.00863944 0
8 1387.13 1854.19 1845 42.9204 1169 1168 29.823 1452.33 1494.93 1484 44.2318 754.806 756.5 26.8826 0.0199493 0.06627014
9 589.065 1445.19 1452 41.8569 1175.07 1169 40.2889 564.75 994.778 988 32.6807 762.644 764 32.4356 -0.0183076 -0.060816531
10 445.653 1360.27 1362 26.519 1170.27 1168 29.1642 403.185 903.091 903 39.9022 757.266 755.5 25.3936 -0.0434921 -0.144477629
11 458.54 1364.32 1366.5 36.0566 1166.75 1168 33.0246 425.873 912.393 911.5 28.4557 754.914 753 29.6499 -0.032098 -0.106627248
12 16931.2 9769.42 9628 614.99 1160.26 1161 34.479 21316.2 13197.2 13260 786.7 756.519 756.5 27.2069 0.100023 0.332269214
13 1097.43 1699.29 1693.5 49.1467 1160.16 1163 29.27 916.142 1186.11 1187.5 38.4605 751.796 751 27.4519 -0.0784159 -0.260491981
14 536.1 1416.14 1416.5 63.7278 1174.26 1169.5 34.9624 503.176 958.107 968 62.815 760.007 758 31.0604 -0.0275259 -0.091439061
15 7149.59 4866.24 4741 357.336 1197.18 1196 33.788 6211.7 4297.38 4243 368.053 788.17 785 30.1304 -0.0610711 -0.202873803
16 394.994 1330 1329 36.4874 1169.52 1169 29.3814 346.454 879.045 877 19.0999 762.478 762 29.7308 -0.056946 -0.189170517
17 626.44 1474.93 1477 40.6797 1181.61 1183.5 30.4425 473.569 942.333 947 40.7695 758.788 760 29.6356 -0.121496 -0.403600976
18 492.666 1396.15 1397.5 41.7034 1178.68 1179 24.7627 435.308 926.423 923.5 39.9141 764.073 763 28.4767 -0.0537565 -0.178575228
19 444.853 1363.45 1359 34.1515 1173.87 1176 27.0137 429.368 920 912 25.8236 760.712 760 29.0036 -0.0153869 -0.051114175
20 491.658 1389.19 1396 43.0098 1172.41 1171 29.8752 468.099 944.923 937.5 43.7885 765.586 764 33.058 -0.0213259 -0.070843106

Total number of rows: 16281

Table truncated, full table size 2008 Kbytes.




Supplementary data files not provided

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