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Sample GSM4633595 Query DataSets for GSM4633595
Status Public on Aug 21, 2020
Title Arabidopsis_WT_L1_G4 (WGBS)
Sample type SRA
 
Source name Arabidopsis_WT_L1_G4 (WGBS)
Organism Arabidopsis thaliana
Characteristics lineage: lineage 1 generation 4
tissue: leaf
ecotype: Col-0
Growth protocol Seeds were planted and grown in 16-hour day lengths and samples were harvested from young above ground tissue. Tissue was flash frozen in liquid nitrogen and DNA was isolated using a Qiagen Plant DNeasy kit (Qiagen, Valencia, CA, USA) according to the manufacturer’s instructions.
Extracted molecule genomic DNA
Extraction protocol MethylC-seq: prepared as previously described in (Urich et al. 2015).
 
Library strategy Bisulfite-Seq
Library source genomic
Library selection RANDOM
Instrument model Illumina NextSeq 500
 
Data processing MethylC-seq: analysis was performed by Methylpy 1.3
Genome_build: Arabidopsis thaliana TAIR10 reference genome
Supplementary_files_format_and_content: methylome tab delimited text file, see "allc_column_header_descriptions.txt" for column headers
 
Submission date Jun 23, 2020
Last update date Aug 22, 2020
Contact name Robert J Schmitz
E-mail(s) schmitz@uga.edu
Organization name University of Georgia
Department Genetics
Street address B416 Davison Life Sciences
City Athens
State/province GA
ZIP/Postal code 30602
Country USA
 
Platform ID GPL19580
Series (1)
GSE153055 AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Relations
BioSample SAMN15351549
SRA SRX8602647

Supplementary file Size Download File type/resource
GSM4633595_allc_arabidopsis_WT_L1_G4.tsv.bz2 128.1 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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